| ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks G Bindea, B Mlecnik, H Hackl, P Charoentong, M Tosolini, A Kirilovsky, ... Bioinformatics 25 (8), 1091-1093, 2009 | 5166 | 2009 |
| Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... Cell reports 18 (1), 248-262, 2017 | 2426 | 2017 |
| Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data F Finotello, C Mayer, C Plattner, G Laschober, D Rieder, H Hackl, ... Genome medicine 11 (1), 1-20, 2019 | 617 | 2019 |
| Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy M Angelova, P Charoentong, H Hackl, ML Fischer, R Snajder, ... Genome biology 16, 1-17, 2015 | 458 | 2015 |
| Computational genomics tools for dissecting tumour–immune cell interactions H Hackl, P Charoentong, F Finotello, Z Trajanoski Nature Reviews Genetics 17 (8), 441-458, 2016 | 245 | 2016 |
| Lipocalin 2 protects from inflammation and tumorigenesis associated with gut microbiota alterations AR Moschen, RR Gerner, J Wang, V Klepsch, TE Adolph, SJ Reider, ... Cell host & microbe 19 (4), 455-469, 2016 | 240 | 2016 |
| Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution M Efremova, D Rieder, V Klepsch, P Charoentong, F Finotello, H Hackl, ... Nature communications 9 (1), 32, 2018 | 210 | 2018 |
| PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways B Mlecnik, M Scheideler, H Hackl, J Hartler, F Sanchez-Cabo, ... Nucleic acids research 33 (suppl_2), W633-W637, 2005 | 160 | 2005 |
| Piezo1 forms mechanosensitive ion channels in the human MCF-7 breast cancer cell line C Li, S Rezania, S Kammerer, A Sokolowski, T Devaney, A Gorischek, ... Scientific reports 5 (1), 1-9, 2015 | 148 | 2015 |
| Signatures of CD8+ T cell dysfunction in AML patients and their reversibility with response to chemotherapy HA Knaus, S Berglund, H Hackl, AL Blackford, JF Zeidner, ... JCI insight 3 (21), 2018 | 119 | 2018 |
| Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis M Scheideler, C Elabd, LE Zaragosi, C Chiellini, H Hackl, ... BMC genomics 9 (1), 1-14, 2008 | 113 | 2008 |
| The human placental sexome differs between trophoblast epithelium and villous vessel endothelium S Cvitic, MS Longtine, H Hackl, K Wagner, MD Nelson, G Desoye, ... PloS one 8 (10), e79233, 2013 | 107 | 2013 |
| Next-generation computational tools for interrogating cancer immunity F Finotello, D Rieder, H Hackl, Z Trajanoski Nature Reviews Genetics 20 (12), 724-746, 2019 | 106 | 2019 |
| Grape-seed derived procyanidins interfere with adipogenesis of 3T3-L1 cells at the onset of differentiation M Pinent, MC Bladé, MJ Salvadó, L Arola, H Hackl, J Quackenbush, ... International journal of obesity 29 (8), 934-941, 2005 | 106 | 2005 |
| Molecular and genetic alterations associated with therapy resistance and relapse of acute myeloid leukemia H Hackl, K Astanina, R Wieser Journal of Hematology & Oncology 10 (1), 1-16, 2017 | 101 | 2017 |
| Molecular processes during fat cell development revealed by gene expression profiling and functional annotation H Hackl, TR Burkard, A Sturn, R Rubio, A Schleiffer, S Tian, ... Genome biology 6, 1-23, 2005 | 94 | 2005 |
| High STAT1 mRNA levels but not its tyrosine phosphorylation are associated with macrophage infiltration and bad prognosis in breast cancer P Tymoszuk, P Charoentong, H Hackl, R Spilka, E Müller-Holzner, ... BMC cancer 14 (1), 1-13, 2014 | 85 | 2014 |
| MARS: microarray analysis, retrieval, and storage system M Maurer, R Molidor, A Sturn, J Hartler, H Hackl, G Stocker, A Prokesch, ... BMC bioinformatics 6, 1-12, 2005 | 81 | 2005 |
| A modified scoring of the NCCN‐IPI is more accurate in the elderly and is improved by albumin and β2‐microglobulin T Melchardt, K Troppan, L Weiss, C Hufnagl, D Neureiter, ... British journal of haematology 168 (2), 239-245, 2015 | 78 | 2015 |
| Impact of antibiotic treatment on immune-checkpoint blockade efficacy in advanced non-squamous non-small cell lung cancer F Huemer, G Rinnerthaler, T Westphal, H Hackl, G Hutarew, ... Oncotarget 9 (23), 16512, 2018 | 75 | 2018 |
