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Anastassis Perrakis
Anastassis Perrakis
Division of Biochemistry, Netherlands Cancer Institute and Oncode Institute, Prof Utrecht U
Bestätigte E-Mail-Adresse bei nki.nl - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Automated protein model building combined with iterative structure refinement
A Perrakis, R Morris, VS Lamzin
Nature structural biology 6 (5), 458-463, 1999
31661999
Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7
G Langer, SX Cohen, VS Lamzin, A Perrakis
Nature protocols 3 (7), 1171-1179, 2008
18802008
RNA-binding protein Dnd1 inhibits microRNA access to target mRNA
M Kedde, MJ Strasser, B Boldajipour, JAFO Vrielink, K Slanchev, ...
Cell 131 (7), 1273-1286, 2007
8912007
The PDB_REDO server for macromolecular structure model optimization
RP Joosten, F Long, GN Murshudov, A Perrakis
IUCrJ 1 (4), 213-220, 2014
8612014
The crystal structure of DNA mismatch repair protein MutS binding to a G· T mismatch
MH Lamers, A Perrakis, JH Enzlin, HHK Winterwerp, N De Wind, ...
Nature 407 (6805), 711-717, 2000
8002000
Developments in the CCP4 molecular-graphics project
L Potterton, S McNicholas, E Krissinel, J Gruber, K Cowtan, P Emsley, ...
Acta Crystallographica Section D: Biological Crystallography 60 (12), 2288-2294, 2004
7192004
wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models
A Perrakis, TK Sixma, KS Wilson, VS Lamzin
Acta Crystallographica Section D: Biological Crystallography 53 (4), 448-455, 1997
6461997
ARP⧸ wARP and automatic interpretation of protein electron density maps
RJ Morris, A Perrakis, VS Lamzin
Methods in enzymology 374, 229-244, 2003
6132003
ARP/wARP and molecular replacement
A Perrakis, M Harkiolaki, KS Wilson, VS Lamzin
Acta Crystallographica Section D: Biological Crystallography 57 (10), 1445-1450, 2001
6012001
Crystal structure of a bacterial chitinase at 2.3 Å resolution
A Perrakis, I Tews, Z Dauter, AB Oppenheim, I Chet, KS Wilson, ...
Structure 2 (12), 1169-1180, 1994
5261994
A new generation of crystallographic validation tools for the protein data bank
RJ Read, PD Adams, WB Arendall, AT Brunger, P Emsley, RP Joosten, ...
Structure 19 (10), 1395-1412, 2011
5142011
Structure and E3‐ligase activity of the Ring–Ring complex of Polycomb proteins Bmi1 and Ring1b
G Buchwald, P van der Stoop, O Weichenrieder, A Perrakis, ...
The EMBO journal 25 (11), 2465-2474, 2006
5112006
Bacterial chitobiase structure provides insight into catalytic mechanism and the basis of Tay–Sachs disease
I Tews, A Perrakis, A Oppenheim, Z Dauter, KS Wilson, CE Vorgias
Nature structural biology 3 (7), 638-648, 1996
4531996
Structure of a cephalosporin synthase
K Valegård, ACT Van Scheltinga, MD Lloyd, T Hara, S Ramaswamy, ...
Nature 394 (6695), 805-809, 1998
4171998
Substrate-assisted catalysis unifies two families of chitinolytic enzymes
I Tews, AC Terwisscha van Scheltinga, A Perrakis, KS Wilson, BW Dijkstra
Journal of the American Chemical Society 119 (34), 7954-7959, 1997
3731997
The CCP4 suite: integrative software for macromolecular crystallography
J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ...
Acta Crystallographica Section D: Structural Biology 79 (6), 449-461, 2023
3502023
Structural basis of substrate discrimination and integrin binding by autotaxin
J Hausmann, S Kamtekar, E Christodoulou, JE Day, T Wu, Z Fulkerson, ...
Nature structural & molecular biology 18 (2), 198-204, 2011
3422011
AlphaFill: enriching AlphaFold models with ligands and cofactors
ML Hekkelman, I de Vries, RP Joosten, A Perrakis
Nature Methods 20 (2), 205-213, 2023
3402023
Towards rationalization of crystallization screening for small-to medium-sized academic laboratories: the PACT/JCSG+ strategy
J Newman, D Egan, TS Walter, R Meged, I Berry, M Ben Jelloul, ...
Acta Crystallographica Section D: Biological Crystallography 61 (10), 1426-1431, 2005
3212005
ARP/wARP's model-building algorithms. I. The main chain
RJ Morris, A Perrakis, VS Lamzin
Acta Crystallographica Section D: Biological Crystallography 58 (6), 968-975, 2002
3092002
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