Viraj B Deshpande
Viraj B Deshpande
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Zitiert von
Zitiert von
Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity
KM Turner, V Deshpande, D Beyter, T Koga, J Rusert, C Lee, B Li, ...
Nature 543 (7643), 122-125, 2017
Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers
H Kim, NP Nguyen, K Turner, S Wu, AD Gujar, J Luebeck, J Liu, ...
Nature genetics 52 (9), 891-897, 2020
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions
E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ...
Bioinformatics 35 (22), 4754-4756, 2019
Exploring the landscape of focal amplifications in cancer using AmpliconArchitect
V Deshpande, J Luebeck, NPD Nguyen, M Bakhtiari, KM Turner, ...
Nature communications 10 (1), 392, 2019
Whole genome sequencing for the diagnosis of neurological repeat expansion disorders in the UK: a retrospective diagnostic accuracy and prospective clinical validation study
K Ibañez, J Polke, RT Hagelstrom, E Dolzhenko, D Pasko, ERA Thomas, ...
The Lancet Neurology 21 (3), 234-245, 2022
AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications
J Luebeck, C Coruh, SR Dehkordi, JT Lange, KM Turner, V Deshpande, ...
Nature communications 11 (1), 4374, 2020
Cerulean: a hybrid assembly using high throughput short and long reads
V Deshpande, EDK Fung, S Pham, V Bafna
Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia …, 2013
ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer
NPD Nguyen, V Deshpande, J Luebeck, PS Mischel, V Bafna
Nucleic acids research 46 (7), 3309-3325, 2018
EcSeg: semantic segmentation of metaphase images containing extrachromosomal DNA
U Rajkumar, K Turner, J Luebeck, V Deshpande, M Chandraker, ...
Iscience 21, 428-435, 2019
REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats
E Dolzhenko, B Weisburd, K Ibañez, IS Rajan-Babu, C Anyansi, ...
Genome medicine 14 (1), 84, 2022
Methods of diagnosing and treating cancer targeting extrachromosomal DNA
P Mischel, P Mali, V Bafna, K Turner, V Deshpande, D Beyter
US Patent 11,193,164, 2021
AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes
J Luebeck, E Huang, F Kim, T Liefeld, B Dameracharla, R Ahuja, ...
bioRxiv, 2024.05. 06.592768, 2024
Methods of diagnosing and treating cancer targeting extrachromosomal dna
P Mischel, P Mali, V Bafna, K Turner, V Deshpande, D Beyter
US Patent App. 17/518,396, 2022
Rapid Detection of Gene Fusions
Viraj Deshpande, Johann Felix Wilhelm Schlesinger, Sean Truong, John Cooper ...
WO Patent US20210193254A1, 2021
Computational methods to study genomic structure and structural variation
VB Deshpande
UC San Diego, 2017
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