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Viraj B Deshpande
Viraj B Deshpande
Bestätigte E-Mail-Adresse bei eng.ucsd.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity
KM Turner, V Deshpande, D Beyter, T Koga, J Rusert, C Lee, B Li, ...
Nature 543 (7643), 122-125, 2017
7022017
Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers
H Kim, NP Nguyen, K Turner, S Wu, AD Gujar, J Luebeck, J Liu, ...
Nature genetics 52 (9), 891-897, 2020
3852020
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions
E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ...
Bioinformatics 35 (22), 4754-4756, 2019
2662019
Exploring the landscape of focal amplifications in cancer using AmpliconArchitect
V Deshpande, J Luebeck, NPD Nguyen, M Bakhtiari, KM Turner, ...
Nature communications 10 (1), 392, 2019
2532019
Whole genome sequencing for the diagnosis of neurological repeat expansion disorders in the UK: a retrospective diagnostic accuracy and prospective clinical validation study
K Ibañez, J Polke, RT Hagelstrom, E Dolzhenko, D Pasko, ERA Thomas, ...
The Lancet Neurology 21 (3), 234-245, 2022
1342022
AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications
J Luebeck, C Coruh, SR Dehkordi, JT Lange, KM Turner, V Deshpande, ...
Nature communications 11 (1), 4374, 2020
772020
Cerulean: a hybrid assembly using high throughput short and long reads
V Deshpande, EDK Fung, S Pham, V Bafna
Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia …, 2013
67*2013
ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer
NPD Nguyen, V Deshpande, J Luebeck, PS Mischel, V Bafna
Nucleic acids research 46 (7), 3309-3325, 2018
582018
EcSeg: semantic segmentation of metaphase images containing extrachromosomal DNA
U Rajkumar, K Turner, J Luebeck, V Deshpande, M Chandraker, ...
Iscience 21, 428-435, 2019
412019
REViewer: haplotype-resolved visualization of read alignments in and around tandem repeats
E Dolzhenko, B Weisburd, K Ibañez, IS Rajan-Babu, C Anyansi, ...
Genome medicine 14 (1), 84, 2022
322022
13. AmpliconSuite: Analyzing focal amplifications in cancer genomes
J Luebeck, E Huang, B Dameracharla, F Kim, T Liefeld, R Ahuja, ...
Cancer Genetics 286, S5, 2024
2024
AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomes
J Luebeck, E Huang, F Kim, T Liefeld, B Dameracharla, R Ahuja, ...
bioRxiv, 2024.05. 06.592768, 2024
2024
Methods of diagnosing and treating cancer targeting extrachromosomal dna
P Mischel, P Mali, V Bafna, K Turner, V Deshpande, D Beyter
US Patent App. 17/518,396, 2022
2022
Methods of diagnosing and treating cancer targeting extrachromosomal DNA
P Mischel, P Mali, V Bafna, K Turner, V Deshpande, D Beyter
US Patent 11,193,164, 2021
2021
Rapid Detection of Gene Fusions
Viraj Deshpande, Johann Felix Wilhelm Schlesinger, Sean Truong, John Cooper ...
WO Patent US20210193254A1, 2021
2021
Computational methods to study genomic structure and structural variation
VB Deshpande
UC San Diego, 2017
2017
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