| chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data AN Schep, B Wu, JD Buenrostro, WJ Greenleaf Nature Methods 14, 975–978, 2017 | 1184 | 2017 |
| Integrated single-cell analysis maps the continuous regulatory landscape of human hematopoietic differentiation JD Buenrostro, MR Corces, CA Lareau, B Wu, AN Schep, MJ Aryee, ... Cell 173 (6), 1535-1548. e16, 2018 | 670 | 2018 |
| Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions AN Schep, JD Buenrostro, SK Denny, K Schwartz, G Sherlock, ... Genome research 25 (11), 1757-1770, 2015 | 368 | 2015 |
| Nfib promotes metastasis through a widespread increase in chromatin accessibility SK Denny, D Yang, CH Chuang, JJ Brady, JS Lim, BM Grüner, SH Chiou, ... Cell 166 (2), 328-342, 2016 | 355 | 2016 |
| Transcript-indexed ATAC-seq for precision immune profiling AT Satpathy, N Saligrama, JD Buenrostro, Y Wei, B Wu, AJ Rubin, ... Nature medicine 24 (5), 580-590, 2018 | 131 | 2018 |
| Unsupervised clustering and epigenetic classification of single cells M Zamanighomi, Z Lin, T Daley, X Chen, Z Duren, A Schep, WJ Greenleaf, ... Nature communications 9 (1), 2410, 2018 | 109 | 2018 |
| Genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12 GT Wong, RP Bonocora, AN Schep, SM Beeler, AJ Lee Fong, LM Shull, ... Journal of bacteriology 199 (7), 10.1128/jb. 00755-16, 2017 | 90 | 2017 |
| Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity X Chen, UM Litzenburger, Y Wei, AN Schep, EL LaGory, H Choudhry, ... Nature communications 9 (1), 4590, 2018 | 85 | 2018 |
| A comparative analysis of transcription factor expression during metazoan embryonic development AN Schep, B Adryan PLoS One 8 (6), e66826, 2013 | 45 | 2013 |
| INO80 chromatin remodeling coordinates metabolic homeostasis with cell division GJ Gowans, AN Schep, KM Wong, DA King, WJ Greenleaf, AJ Morrison Cell reports 22 (3), 611-623, 2018 | 38 | 2018 |
| Characterization of an ultra-conserved putative cis-regulatory module at the mammalian telomerase reverse transcriptase gene DA Tran, TC Wong, AN Schep, RA Drewell DNA and cell biology 29 (9), 499-508, 2010 | 5 | 2010 |
| Identification and characterization of dynein genes in Tetrahymena DE Wilkes, N Bennardo, CWC Chan, YL Chang, EO Corpuz, J DuMond, ... Methods in cell biology 92, 11-30, 2009 | 5 | 2009 |
| Transcriptional repression by the proximal exonic region at the human TERT gene TC Wong, ES Sokol, AN Schep, M Punjiya, DA Tran, D Allan, RA Drewell Gene 486 (1-2), 65-73, 2011 | 3 | 2011 |
| Pi-ATAC X Chen, U Litzenburger, Y Wei, AN Schep, EL LaGory, H Choudhry, ... | | 2018 |
| Transcription factor binding inference using V-plots SK Denny, D Yang, CH Chuang, JJ Brady, JS Lim, BM Grüner, SH Chiou, ... Patricia J. Gumport, Vice Provost for Graduate Education, 66, 2017 | | 2017 |
| Inferring transcription factor-associated accessibility variation from single-cell epigenomic data AN Schep, B Wu, JD Buenrostro, WJ Greenleaf Patricia J. Gumport, Vice Provost for Graduate Education, 72, 2017 | | 2017 |
| Methods for Inferring Nucleosome Positioning and Transcription Factor Binding A Schep Stanford University, 2017 | | 2017 |
| chromVAR: Inferring transcription factor variation from single-cell epigenomic data AN Schep, B Wu, JD Buenrostro, WJ Greenleaf | | |
