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Alberto Valdeolivas
Alberto Valdeolivas
Roche Pharma Research and Early Development, Basel, Switzerland
Bestätigte E-Mail-Adresse bei roche.com
Titel
Zitiert von
Zitiert von
Jahr
The global phosphorylation landscape of SARS-CoV-2 infection
M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ...
Cell 182 (3), 685-712. e19, 2020
8952020
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
274*2019
Random Walk With Restart On Multiplex And Heterogeneous Biological Networks
A Valdeolivas, L Tichit, C Navarro, S Perrin, G Odelin, N Levy, P Cau, ...
Bioinformatics, 2018
2492018
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ...
Nature communications 13 (1), 3224, 2022
234*2022
Integrated intra‐and intercellular signaling knowledge for multicellular omics analysis
D Türei, A Valdeolivas, L Gul, N Palacio‐Escat, M Klein, O Ivanova, ...
Molecular systems biology 17 (3), e9923, 2021
2002021
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
862021
MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach
L Pio-Lopez, A Valdeolivas, L Tichit, É Remy, A Baudot
Scientific reports 11 (1), 8794, 2021
382021
Identifying communities from multiplex biological networks by randomized optimization of modularity
G Didier, A Valdeolivas, A Baudot
F1000Research 7, 2018
212018
Integrative proteomic and phosphoproteomic profiling of prostate cell lines
M Katsogiannou, JB Boyer, A Valdeolivas, E Remy, L Calzone, ...
PLOS ONE, 2019
192019
Computational drug repurposing against SARS-CoV-2 reveals plasma membrane cholesterol depletion as key factor of antiviral drug activity
S Barsi, H Papp, A Valdeolivas, DJ Tóth, A Kuczmog, M Madai, ...
PLoS computational biology 18 (4), e1010021, 2022
92022
De wit
M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, ...
E, 0
9
Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
A Valdeolivas, B Amberg, N Giroud, M Richardson, EJC Gálvez, S Badillo, ...
NPJ precision oncology 8 (1), 10, 2024
72024
Contextualizing protein representations using deep learning on protein networks and single-cell data
MM Li, Y Huang, M Sumathipala, MQ Liang, A Valdeolivas, ...
bioRxiv, 2023
72023
Community assessment of methods to deconvolve cellular composition from bulk gene expression
BS White, A de Reyniès, AM Newman, JJ Waterfall, A Lamb, F Petitprez, ...
bioRxiv, 2022.06. 03.494221, 2022
72022
Mapping the epithelial–immune cell interactome upon infection in the gut and the upper airways
M Poletti, A Treveil, L Csabai, L Gul, D Modos, M Madgwick, M Olbei, ...
NPJ Systems Biology and Applications 8 (1), 15, 2022
42022
A network medicine approach to study comorbidities in heart failure with preserved ejection fraction
JD Lanzer, A Valdeolivas, M Pepin, H Hund, J Backs, N Frey, ...
BMC medicine 21 (1), 267, 2023
32023
Charting the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics
A Valdeolivas, B Amberg, N Giroud, M Richardson, EJC Gálvez, S Badillo, ...
bioRxiv, 2023.01. 23.525135, 2023
22023
Chrysalis: decoding tissue compartments in spatial transcriptomics with archetypal analysis
D Turos, J Vasiljevic, K Hahn, S Rottenberg, A Valdeolivas
bioRxiv, 2023.08. 17.553606, 2023
22023
Integrated intra-and intercellular signaling knowledge for multicellular omics analysis. bioRxiv 2020.08. 03.221242
D Türei, A Valdeolivas, L Gul, N Palacio-Escat, O Ivanova, A Gábor, ...
22020
TF activity inference from scRNA-seq data with DoRothEA as regulon resource
CH Holland, A Valdeolivas, J Saez-Rodriguez
Bioconductor, 2020
22020
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