| Performance comparison of benchtop high-throughput sequencing platforms NJ Loman, RV Misra, TJ Dallman, C Constantinidou, SE Gharbia, J Wain, ... Nature biotechnology 30 (5), 434-439, 2012 | 1759 | 2012 |
| The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity Z Zhou, NF Alikhan, K Mohamed, Y Fan, M Achtman, D Brown, ... Genome research 30 (1), 138-152, 2020 | 684 | 2020 |
| Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ... Nature microbiology 2 (2), 1-10, 2016 | 607 | 2016 |
| Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to … EJ Klemm, S Shakoor, AJ Page, FN Qamar, K Judge, DK Saeed, ... MBio 9 (1), 10.1128/mbio. 00105-18, 2018 | 572 | 2018 |
| MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island PM Ashton, S Nair, T Dallman, S Rubino, W Rabsch, S Mwaigwisya, ... Nature biotechnology 33 (3), 296-300, 2015 | 540 | 2015 |
| The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution LH Greene, TE Lewis, S Addou, A Cuff, T Dallman, M Dibley, O Redfern, ... Nucleic acids research 35 (suppl_1), D291-D297, 2007 | 355 | 2007 |
| The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis F Pearl, A Todd, I Sillitoe, M Dibley, O Redfern, T Lewis, C Bennett, ... Nucleic acids research 33 (suppl_1), D247-D251, 2005 | 347 | 2005 |
| Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ... Genome biology 16, 1-14, 2015 | 336 | 2015 |
| Detection of the plasmid-mediated mcr-1 gene conferring colistin resistance in human and food isolates of Salmonella enterica and Escherichia coli in England … M Doumith, G Godbole, P Ashton, L Larkin, T Dallman, M Day, M Day, ... Journal of Antimicrobial Chemotherapy 71 (8), 2300-2305, 2016 | 301 | 2016 |
| Rotavirus genotypes co-circulating in Europe between 2006 and 2009 as determined by EuroRotaNet, a pan-European collaborative strain surveillance network MIGO MARA, T Dallman, KBA NYAI, BBO TTIGER, J Buesa, S Diedrich, ... | 274 | 2010 |
| Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study KS Baker, TJ Dallman, PM Ashton, M Day, G Hughes, PD Crook, ... The Lancet infectious diseases 15 (8), 913-921, 2015 | 265 | 2015 |
| Identification of Salmonella for public health surveillance using whole genome sequencing PM Ashton, S Nair, TM Peters, JA Bale, DG Powell, A Painset, R Tewolde, ... PeerJ 4, e1752, 2016 | 249 | 2016 |
| Whole-Genome Sequencing for National Surveillance of Shiga Toxin–Producing Escherichia coli O157 TJ Dallman, L Byrne, PM Ashton, LA Cowley, NT Perry, G Adak, ... Clinical Infectious Diseases 61 (3), 305-312, 2015 | 198 | 2015 |
| Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ... Nature genetics 48 (10), 1211-1217, 2016 | 196 | 2016 |
| Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak ME Pearce, NF Alikhan, TJ Dallman, Z Zhou, K Grant, MCJ Maiden International journal of food microbiology 274, 1-11, 2018 | 191 | 2018 |
| SnapperDB: a database solution for routine sequencing analysis of bacterial isolates T Dallman, P Ashton, U Schafer, A Jironkin, A Painset, S Shaaban, ... Bioinformatics 34 (17), 3028-3029, 2018 | 187 | 2018 |
| Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal Salmonella enterica S Neuert, S Nair, MR Day, M Doumith, PM Ashton, KC Mellor, C Jenkins, ... Frontiers in microbiology 9, 592, 2018 | 169 | 2018 |
| Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species KS Baker, TJ Dallman, N Field, T Childs, H Mitchell, M Day, FX Weill, ... Nature communications 9 (1), 1462, 2018 | 156 | 2018 |
| Rotavirus surveillance in Europe, 2005–2008: web-enabled reporting and real-time analysis of genotyping and epidemiological data M Iturriza-Gómara, T Dallman, K Bányai, B Böttiger, J Buesa, S Diedrich, ... Journal of Infectious Diseases 200 (Supplement 1), S215, 2009 | 150 | 2009 |
| Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis T Inns, PM Ashton, S Herrera-Leon, J Lighthill, S Foulkes, T Jombart, ... Epidemiology & Infection 145 (2), 289-298, 2017 | 135 | 2017 |
