Todd Lowe
Todd Lowe
Professor of Biomolecular Engineering, UC Santa Cruz Genomics Institute, UCSC RNA Center, University
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Zitiert von
Zitiert von
Initial sequencing and analysis of the human genome
US DOE Joint Genome Institute: Hawkins Trevor 4 Branscomb Elbert 4 Predki ...
nature 409 (6822), 860-921, 2001
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
TM Lowe, SR Eddy
Nucleic acids research 25 (5), 955-964, 1997
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Arabidopsis Genome Initiative genomeanalysis@ tgr. org genomeanalysis@ gsf. de
nature 408 (6814), 796-815, 2000
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
P Schattner, AN Brooks, TM Lowe
Nucleic acids research 33 (suppl_2), W686-W689, 2005
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
TM Lowe, PP Chan
Nucleic acids research 44 (W1), W54-W57, 2016
dbEST-database for" expressed sequence tags".
MS Boguski, TMJ Lowe, CM Tolstoshev
tRNAscan-SE: searching for tRNA genes in genomic sequences
PP Chan, TM Lowe
Gene prediction: methods and protocols, 1-14, 2019
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
CB Walker, JR de la Torre, MG Klotz, H Urakawa, N Pinel, DJ Arp, ...
Proceedings of the National Academy of Sciences 107 (19), 8818-8823, 2010
General concepts for PCR primer design
CW Dieffenbach, TM Lowe, GS Dveksler
PCR methods appl 3 (3), S30-S37, 1993
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
PP Chan, TM Lowe
Nucleic acids research 37 (suppl_1), D93-D97, 2009
Genome sequence of Halobacterium species NRC-1
WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ...
Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
PP Chan, TM Lowe
Nucleic acids research 44 (D1), D184-D189, 2016
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
PP Chan, BY Lin, AJ Mak, TM Lowe
Nucleic acids research 49 (16), 9077-9096, 2021
A computational screen for methylation guide snoRNAs in yeast
TM Lowe, SR Eddy
Science 283 (5405), 1168-1171, 1999
Homologs of small nucleolar RNAs in Archaea
AD Omer, TM Lowe, AG Russell, H Ebhardt, SR Eddy, PP Dennis
Science 288 (5465), 517-522, 2000
ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments
AE Cozen, E Quartley, AD Holmes, E Hrabeta-Robinson, EM Phizicky, ...
Nature methods 12 (9), 879-884, 2015
A computer program for selection of oligonucleotide primers for polymerase chain reactions
T Lowe, J Sharefkin, SQ Yang, CW Dieffenbach
Nucleic Acids Research 18 (7), 1757-1761, 1990
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
JG Underwood, AV Uzilov, S Katzman, CS Onodera, JE Mainzer, ...
Nature methods 7 (12), 995-1001, 2010
The complete genome sequence of Haloferax volcanii DS2, a model archaeon
AL Hartman, C Norais, JH Badger, S Delmas, S Haldenby, R Madupu, ...
PloS one 5 (3), e9605, 2010
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