Tue Sparholt Jørgensen
Tue Sparholt Jørgensen
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Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
Extrachromosomal circular DNA is common in yeast
HD Møller, L Parsons, TS Jørgensen, D Botstein, B Regenberg
Proceedings of the National Academy of Sciences 112 (24), E3114-E3122, 2015
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
Highly efficient DSB-free base editing for streptomycetes with CRISPR-BEST
Y Tong, CM Whitford, HL Robertsen, K Blin, TS Jørgensen, AK Klitgaard, ...
Proceedings of the National Academy of Sciences 116 (41), 20366-20375, 2019
Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome
TS Jørgensen, Z Xu, MA Hansen, SJ Sørensen, LH Hansen
PloS one 9 (2), e87924, 2014
Primary cilia and aberrant cell signaling in epithelial ovarian cancer
DL Egeberg, M Lethan, R Manguso, L Schneider, A Awan, TS Jørgensen, ...
Cilia 1, 1-17, 2012
Gelatinous plankton is important in the diet of European eel (Anguilla anguilla) larvae in the Sargasso Sea
DJ Ayala, P Munk, RBC Lundgreen, SJ Traving, C Jaspers, TS Jørgensen, ...
Scientific Reports 8 (1), 6156, 2018
Current strategies for mobilome research
TS Jørgensen, AS Kiil, MA Hansen, SJ Sørensen, LH Hansen
Frontiers in microbiology 5, 750, 2015
Genomic and chemical diversity of Bacillus subtilis secondary metabolites against plant pathogenic fungi
HT Kiesewalter, CN Lozano-Andrade, M Wibowo, ML Strube, G Maróti, ...
Msystems 6 (1), 10.1128/msystems. 00770-20, 2021
CRISPR–Cas9, CRISPRi and CRISPR-BEST-mediated genetic manipulation in streptomycetes
Y Tong, CM Whitford, K Blin, TS Jørgensen, T Weber, SY Lee
Nature Protocols, 1-33, 2020
A versatile genetic engineering toolkit for E. coli based on CRISPR-prime editing
Y Tong, TS Jørgensen, CM Whitford, T Weber, SY Lee
Nature Communications 12 (1), 5206, 2021
n-3 PUFA biosynthesis by the copepod Apocyclops royi documented using fatty acid profile analysis and gene expression analysis
BLH Nielsen, L Gøtterup, TS Jørgensen, BW Hansen, LH Hansen, ...
Biology Open 8 (2), bio038331, 2019
The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution
TS Jørgensen, B Petersen, HCB Petersen, PD Browne, S Prost, ...
Genome biology and evolution 11 (5), 1440-1450, 2019
Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains
MP Lorentzen, H Campbell-Sills, TS Jorgensen, TK Nielsen, M Coton, ...
BMC genomics 20, 1-15, 2019
Complete genome sequences of 13 Bacillus subtilis soil isolates for studying secondary metabolite diversity
HT Kiesewalter, CN Lozano-Andrade, G Maróti, D Snyder, VS Cooper, ...
Microbiology Resource Announcements 9 (2), 10.1128/mra. 01406-19, 2020
SpikeSeq: A rapid, cost efficient and simple method to identify SARS-CoV-2 variants of concern by Sanger sequencing part of the spike protein gene
TS Jørgensen, MS Pedersen, K Blin, F Kuntke, HK Salling, RL Marvig, ...
Journal of Virological Methods, 114648, 2022
Eggs of the copepod Acartia tonsa Dana require hypoxic conditions to tolerate prolonged embryonic development arrest
TS Jørgensen, PM Jepsen, HCB Petersen, DS Friis, BW Hansen
BMC ecology 19 (1), 1-9, 2019
The Whole Genome Sequence and mRNA Transcriptome of the Tropical Cyclopoid Copepod Apocyclops royi
TS Jørgensen, BLH Nielsen, B Petersen, PD Browne, BW Hansen, ...
G3: Genes, Genomes, Genetics 9 (5), 1295-1302, 2019
Metagenomic comparison of antibiotic resistance genes associated with liquid and dewatered biosolids
CA McCall, E Bent, TS Jørgensen, KE Dunfield, MB Habash
Journal of environmental quality 45 (2), 463-470, 2016
Distribution of ε-Poly-l-Lysine Synthetases in Coryneform Bacteria Isolated from Cheese and Human Skin
X Jiang, Y Radko, T Gren, E Palazzotto, TS Jørgensen, T Cheng, M Xian, ...
Applied and Environmental Microbiology 87 (10), e01841-20, 2021
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