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Daniel Petras
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
133662019
Minimum information about a biosynthetic gene cluster
MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ...
Nature chemical biology 11 (9), 625-631, 2015
8142015
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
7672020
Reproducible molecular networking of untargeted mass spectrometry data using GNPS
AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ...
Nature protocols 15 (6), 1954-1991, 2020
3942020
Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra
K Dührkop, LF Nothias, M Fleischauer, R Reher, M Ludwig, MA Hoffmann, ...
Nature biotechnology 39 (4), 462-471, 2021
3392021
Snake venomics of African spitting cobras: toxin composition and assessment of congeneric cross-reactivity of the pan-African EchiTAb-Plus-ICP antivenom by antivenomics and …
D Petras, L Sanz, A Segura, M Herrera, M Villalta, D Solano, M Vargas, ...
Journal of proteome research 10 (3), 1266-1280, 2011
2272011
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
1852020
Significance estimation for large scale metabolomics annotations by spectral matching
K Scheubert, F Hufsky, D Petras, M Wang, LF Nothias, K Dührkop, ...
Nature Communications 8 (1494), 2017
1662017
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ...
Nature communications 12 (1), 3832, 2021
147*2021
The gyrase inhibitor albicidin consists of p-aminobenzoic acids and cyanoalanine
S Cociancich, A Pesic, D Petras, S Uhlmann, J Kretz, V Schubert, ...
Nature chemical biology 11 (3), 195-197, 2015
1412015
Integrative analysis of multimodal mass spectrometry data in MZmine 3
R Schmid, S Heuckeroth, A Korf, A Smirnov, O Myers, TS Dyrlund, ...
Nature biotechnology 41 (4), 447-449, 2023
1332023
Database-independent molecular formula annotation using Gibbs sampling through ZODIAC
M Ludwig, LF Nothias, K Dührkop, I Koester, M Fleischauer, MA Hoffmann, ...
Nature Machine Intelligence 2 (10), 629-641, 2020
127*2020
The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization
C Molina-Santiago, JR Pearson, Y Navarro, MV Berlanga-Clavero, ...
Nature communications 10 (1), 1919, 2019
1142019
Venom Proteomics of Indonesian King Cobra, Ophiophagus hannah: Integrating Top-Down and Bottom-Up Approaches
D Petras, P Heiss, RD Süssmuth, JJ Calvete
Journal of proteome research 14 (6), 2539-2556, 2015
1122015
High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter
D Petras, I Koester, R Da Silva, BM Stephens, AF Haas, CE Nelson, ...
Frontiers in Marine Science 4, 405, 2017
1082017
Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data
AA Aksenov, I Laponogov, Z Zhang, SLF Doran, I Belluomo, D Veselkov, ...
Nature Biotechnology 39 (2), 169-173, 2020
1002020
Dissection of the Natural Diversification of Microcystin Provides Lessons for Synthetic Biology of NRPS
S Sabine Meyer, JC Kehr, A Mainz, D Dehm, D Petras, RD Süssmuth, ...
Cell Chemical Biology 23 (4), 462–471, 2016
1002016
A community resource for paired genomic and metabolomic data mining
MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, ...
Nature Chemical Biology 17 (4), 363-368, 2021
972021
Convergent evolution of pain-inducing defensive venom components in spitting cobras
TD Kazandjian, D Petras, SD Robinson, J van Thiel, HW Greene, ...
Science 371 (6527), 386-390, 2021
972021
ReDU: a framework to find and reanalyze public mass spectrometry data
AK Jarmusch, M Wang, CM Aceves, RS Advani, S Aguirre, AA Aksenov, ...
Nature Methods 17 (9), 901-904, 2020
95*2020
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