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Adam Siepel
Adam Siepel
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory
Bestätigte E-Mail-Adresse bei cshl.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
61282007
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, ...
Genome research 15 (8), 1034-1050, 2005
49882005
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1
Nature 432 (7018), 695-716, 2004
29712004
Detection of nonneutral substitution rates on mammalian phylogenies
KS Pollard, MJ Hubisz, KR Rosenbloom, A Siepel
Genome research 20 (1), 110-121, 2010
28792010
The UCSC genome browser database: update 2006
AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ...
Nucleic acids research 34 (suppl_1), D590-D598, 2006
15962006
Evolutionary and biomedical insights from the rhesus macaque genome
RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ...
science 316 (5822), 222-234, 2007
15812007
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
13022011
An RNA gene expressed during cortical development evolved rapidly in humans
KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ...
Nature 443 (7108), 167-172, 2006
11892006
Phylogenetic hidden Markov models
R Nielsen, A Siepel, D Haussler
Statistical methods in molecular evolution, 325-351, 2005
818*2005
Comparative analyses of multi-species sequences from targeted genomic regions
JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, ...
Nature 424 (6950), 788-793, 2003
7932003
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
LJ Core, AL Martins, CG Danko, CT Waters, A Siepel, JT Lis
Nature genetics 46 (12), 1311-1320, 2014
7422014
Genome sequencing highlights the dynamic early history of dogs
AH Freedman, I Gronau, RM Schweizer, D Ortega-Del Vecchyo, E Han, ...
PLoS genetics 10 (1), e1004016, 2014
7182014
Comparative and demographic analysis of orang-utan genomes
DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ...
Nature 469 (7331), 529-533, 2011
7142011
Bayesian inference of ancient human demography from individual genome sequences
I Gronau, MJ Hubisz, B Gulko, CG Danko, A Siepel
Nature genetics 43 (10), 1031-1034, 2011
6932011
Identification and classification of conserved RNA secondary structures in the human genome
JS Pedersen, G Bejerano, A Siepel, K Rosenbloom, K Lindblad-Toh, ...
PLoS computational biology 2 (4), e33, 2006
6762006
Patterns of positive selection in six mammalian genomes
C Kosiol, T Vinař, RR da Fonseca, MJ Hubisz, CD Bustamante, R Nielsen, ...
PLoS genetics 4 (8), e1000144, 2008
6412008
Forces shaping the fastest evolving regions in the human genome
KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, ...
PLoS genetics 2 (10), e168, 2006
5912006
A distal enhancer and an ultraconserved exon are derived from a novel retroposon
G Bejerano, CB Lowe, N Ahituv, B King, A Siepel, SR Salama, EM Rubin, ...
Nature 441 (7089), 87-90, 2006
5832006
Ancient gene flow from early modern humans into Eastern Neanderthals
M Kuhlwilm, I Gronau, MJ Hubisz, C De Filippo, J Prado-Martinez, ...
Nature 530 (7591), 429-433, 2016
5782016
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus
Cell 145 (4), 622-634, 2011
5662011
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