| Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... Cell reports 18 (1), 248-262, 2017 | 3154 | 2017 |
| Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data F Finotello, C Mayer, C Plattner, G Laschober, D Rieder, H Hackl, ... Genome medicine 11 (1), 1-20, 2019 | 870 | 2019 |
| Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data F Finotello, C Mayer, C Plattner, G Laschober, D Rieder, H Hackl, ... Genome medicine 11 (1), 1-20, 2019 | 870 | 2019 |
| Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data F Finotello, C Mayer, C Plattner, G Laschober, D Rieder, H Hackl, ... Genome medicine 11 (1), 1-20, 2019 | 870 | 2019 |
| Cardiopulmonary recovery after COVID-19: an observational prospective multicentre trial T Sonnweber, S Sahanic, A Pizzini, A Luger, C Schwabl, B Sonnweber, ... European Respiratory Journal 57 (4), 2021 | 439 | 2021 |
| Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution M Efremova, D Rieder, V Klepsch, P Charoentong, F Finotello, H Hackl, ... Nature communications 9 (1), 1-13, 2018 | 259 | 2018 |
| Distinct 5-methylcytosine profiles in poly (A) RNA from mouse embryonic stem cells and brain T Amort, D Rieder, A Wille, D Khokhlova-Cubberley, C Riml, L Trixl, ... Genome biology 18 (1), 1-16, 2017 | 251 | 2017 |
| Neoantigens generated by individual mutations and their role in cancer immunity and immunotherapy M Efremova, F Finotello, D Rieder, Z Trajanoski Frontiers in immunology 8, 1679, 2017 | 205 | 2017 |
| Pancancer immunogenomic analyses reveal genotypeimmunophenotype relationships and predictors of response to checkpoint blockade. Cell Rep. 2017; 18: 248–62 P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... SUPPLEMENTARY TABLES Supplementary Table S7 Sequences of siRNAs targeting …, 0 | 176* | |
| Deconvoluting tumor-infiltrating immune cells from RNA-seq data using quanTIseq C Plattner, F Finotello, D Rieder Methods in enzymology 636, 261-285, 2020 | 157 | 2020 |
| Next-generation computational tools for interrogating cancer immunity F Finotello, D Rieder, H Hackl, Z Trajanoski Nature Reviews Genetics 20 (12), 724-746, 2019 | 129 | 2019 |
| Transcription factories D Rieder, Z Trajanoski, J McNally Frontiers in genetics 3, 221, 2012 | 126 | 2012 |
| Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data G Sturm, T Szabo, G Fotakis, M Haider, D Rieder, Z Trajanoski, F Finotello Bioinformatics 36 (18), 4817-4818, 2020 | 118 | 2020 |
| High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer S Salcher, G Sturm, L Horvath, G Untergasser, C Kuempers, G Fotakis, ... Cancer Cell 40 (12), 1503-1520. e8, 2022 | 107 | 2022 |
| Osmium‐mediated transformation of 4‐thiouridine to cytidine as key to study RNA dynamics by sequencing C Riml, T Amort, D Rieder, C Gasser, A Lusser, R Micura Angewandte Chemie International Edition 56 (43), 13479-13483, 2017 | 96 | 2017 |
| TIminer: NGS data mining pipeline for cancer immunology and immunotherapy E Tappeiner, F Finotello, P Charoentong, C Mayer, D Rieder, Z Trajanoski Bioinformatics 33 (19), 3140-3141, 2017 | 86 | 2017 |
| Satb2 determines miRNA expression and long-term memory in the adult central nervous system C Jaitner, C Reddy, A Abentung, N Whittle, D Rieder, A Delekate, M Korte, ... Elife 5, e17361, 2016 | 76 | 2016 |
| Generic features of tertiary chromatin structure as detected in natural chromosomes WG Müller, D Rieder, G Kreth, C Cremer, Z Trajanoski, JG McNally Molecular and cellular biology 24 (21), 9359-9370, 2004 | 76 | 2004 |
| NAT8L (N-acetyltransferase 8-like) accelerates lipid turnover and increases energy expenditure in brown adipocytes AR Pessentheiner, HJ Pelzmann, E Walenta, M Schweiger, LN Groschner, ... Journal of Biological Chemistry 288 (50), 36040-36051, 2013 | 68 | 2013 |
| Guadecitabine plus ipilimumab in unresectable melanoma: the NIBIT-M4 clinical trial AM Di Giacomo, A Covre, F Finotello, D Rieder, R Danielli, L Sigalotti, ... Clinical Cancer Research 25 (24), 7351-7362, 2019 | 62 | 2019 |
