Ricardo Omar Ramirez Flores
Ricardo Omar Ramirez Flores
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Spatial multi-omic map of human myocardial infarction
C Kuppe, RO Ramirez Flores, Z Li, S Hayat, RT Levinson, X Liao, ...
Nature 608 (7924), 766-777, 2022
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ...
Nature communications 13 (1), 3224, 2022
decoupleR: ensemble of computational methods to infer biological activities from omics data
P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ...
Bioinformatics Advances 2 (1), vbac016, 2022
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data
J Tanevski, ROR Flores, A Gabor, D Schapiro, J Saez-Rodriguez
Genome biology 23 (1), 97, 2022
Gene regulatory network inference in the era of single-cell multi-omics
P Badia-i-Mompel, L Wessels, S Müller-Dott, R Trimbour, ...
Nature Reviews Genetics 24 (11), 739-754, 2023
The spatial transcriptomic landscape of the healing mouse intestine following damage
SM Parigi, L Larsson, S Das, RO Ramirez Flores, A Frede, KP Tripathi, ...
Nature communications 13 (1), 828, 2022
Consensus transcriptional landscape of human end‐stage heart failure
RO Ramirez Flores, JD Lanzer, CH Holland, F Leuschner, P Most, ...
Journal of the American Heart Association 10 (7), e019667, 2021
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities
S Müller-Dott, E Tsirvouli, M Vazquez, RO Ramirez Flores, ...
Nucleic acids research 51 (20), 10934-10949, 2023
B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing
A Frede, P Czarnewski, G Monasterio, KP Tripathi, DA Bejarano, ...
Immunity 55 (12), 2336-2351. e12, 2022
Transcriptomic cross‐species analysis of chronic liver disease reveals consistent regulation between humans and mice
CH Holland, RO Ramirez Flores, M Myllys, R Hassan, K Edlund, ...
Hepatology communications 6 (1), 161-177, 2022
Integrative analyses of TEDDY Omics data reveal lipid metabolism abnormalities, increased intracellular ROS and heightened inflammation prior to autoimmunity for type 1 diabetes
L Balzano-Nogueira, R Ramirez, T Zamkovaya, J Dailey, AN Ardissone, ...
Genome biology 22, 1-27, 2021
LIANA+: an all-in-one cell-cell communication framework
D Dimitrov, PSL Schäfer, E Farr, P Rodriguez Mier, S Lobentanzer, ...
BioRxiv, 2023.08. 19.553863, 2023
Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease
ROR Flores, JD Lanzer, D Dimitrov, B Velten, J Saez-Rodriguez
Elife 12, e93161, 2023
Spatial cell type mapping of multiple sclerosis lesions
C Lerma-Martin, P Badia-i-Mompel, RO Ramirez Flores, P Sekol, ...
BioRxiv, 2022.11. 03.514906, 2022
Explainable multi-view framework for dissecting inter-cellular signaling from highly multiplexed spatial data. Biorxiv 2020.05. 08.084145 (2020)
J Tanevski, A Gabor, ROR Flores, D Schapiro, J Saez-Rodriguez
Transcriptomic cross-species analysis of chronic liver disease reveals consistent regulation between humans and mice. Hepatol Commun 6 (1): 161–177
CH Holland, RO Ramirez Flores, M Myllys
Explainabl e multiview framework for dissecting spatial relationships from highly multiplexe d data
J Tanevski, ROR Flores, A Gabor, D Schapiro, J Saez-Rodriguez
Genome Biol 23 (1), 97, 2022
Complementing cell taxonomies with a multicellular analysis of tissues
RO Ramirez Flores, PSL Schäfer, L Küchenhoff, J Saez-Rodriguez
Physiology 39 (3), 129-141, 2024
Single-cell transcriptomics reveal distinctive patterns of fibroblast activation in murine heart failure with preserved ejection fraction
JD Lanzer, LM Wienecke, RO Ramirez-Flores, MM Zylla, N Hartmann, ...
bioRxiv, 2023.05. 09.539983, 2023
Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results
V Paton, RO Ramirez Flores, A Gabor, P Badia-i-Mompel, J Tanevski, ...
Nucleic Acids Research, gkae552, 2024
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