| Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ... Bioinformatics 35 (14), i436-i445, 2019 | 479 | 2019 |
| Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data G Sturm, F Finotello, M List Bioinformatics for Cancer Immunotherapy, 223-232, 2020 | 91 | 2020 |
| Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data G Sturm, T Szabo, G Fotakis, M Haider, D Rieder, Z Trajanoski, F Finotello Bioinformatics 36 (18), 4817-4818, 2020 | 74 | 2020 |
| CD39 identifies the CD4+ tumor-specific T-cell population in human cancer KE Kortekaas, SJ Santegoets, G Sturm, I Ehsan, SL van Egmond, ... Cancer immunology research, 2020 | 69* | 2020 |
| Detect tissue heterogeneity in gene expression data with BioQC JD Zhang, K Hatje, G Sturm, C Broger, M Ebeling, M Burtin, F Terzi, ... BMC genomics 18, 1-9, 2017 | 47 | 2017 |
| Inducers of the endothelial cell barrier identified through chemogenomic screening in genome-edited hPSC-endothelial cells F Roudnicky, JD Zhang, BK Kim, NJ Pandya, Y Lan, L Sach-Peltason, ... Proceedings of the National Academy of Sciences 117 (33), 19854-19865, 2020 | 34 | 2020 |
| The AIMe registry for artificial intelligence in biomedical research J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ... Nature methods 18 (10), 1128-1131, 2021 | 31 | 2021 |
| High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer S Salcher, G Sturm, L Horvath, G Untergasser, C Kuempers, G Fotakis, ... Cancer Cell 40 (12), 1503-1520. e8, 2022 | 24 | 2022 |
| Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival Z Abdulrahman, SJ Santegoets, G Sturm, P Charoentong, ME Ijsselsteijn, ... Journal for immunotherapy of cancer 10 (2), 2022 | 12 | 2022 |
| NKG2A is a late immune checkpoint on CD8 T cells and marks repeated stimulation and cell division L Borst, M Sluijter, G Sturm, P Charoentong, SJ Santegoets, M van Gulijk, ... International journal of cancer 150 (4), 688-704, 2022 | 10 | 2022 |
| CD161 expression and regulation defines rapidly responding effector CD4+ T cells associated with improved survival in HPV16-associated tumors CL Duurland, SJ Santegoets, Z Abdulrahman, NM Loof, G Sturm, ... Journal for immunotherapy of cancer 10 (1), 2022 | 9 | 2022 |
| Tissue heterogeneity is prevalent in gene expression studies G Sturm, M List, JD Zhang NAR Genomics and Bioinformatics 3 (3), lqab077, 2021 | 7 | 2021 |
| The scverse project provides a computational ecosystem for single-cell omics data analysis I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ... Nature Biotechnology, 1-3, 2023 | 5 | 2023 |
| SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type composition A Dietrich, G Sturm, L Merotto, F Marini, F Finotello, M List Bioinformatics 38 (Supplement_2), ii141-ii147, 2022 | 5 | 2022 |
| Dynamic, Transient, and Robust Increase in the Innervation of the Inflamed Mucosa in Inflammatory Bowel Diseases M Gonzalez Acera, M Bubeck, F Mascia, L Diemand, G Sturm, AA Kühl, ... Cells 10 (9), 2253, 2021 | 3 | 2021 |
| Immune cell dynamics deconvoluted by single-cell RNA sequencing in normothermic machine perfusion of the liver T Hautz, S Salcher, M Fodor, G Sturm, S Ebner, A Mair, M Trebo, ... Nature Communications 14 (1), 2285, 2023 | 2 | 2023 |
| Nf-Core/rnaseq: Nf-Core/rnaseq v3. 7-Iron Iguana H Patel, P Ewels, A Peltzer, R Hammarén, O Botvinnik, G Sturm, ... | 2 | 2022 |
| Functional and spatial proteomics profiling reveals intra-and intercellular signaling crosstalk in colorectal cancer C Plattner, G Lamberti, P Blattmann, A Kirchmair, D Rieder, Z Loncova, ... | 1 | 2022 |
| In Silico Cell-Type Deconvolution Methods in Cancer Immunotherapy G Sturm, F Finotello, M List Bioinformatics for Cancer Immunotherapy, 213-222, 2020 | 1 | 2020 |
| Proteolytic Activity of the Paracaspase MALT1 Is Involved in Epithelial Restitution and Mucosal Healing L Wittner, L Wagener, JJ Wiese, I Stolzer, SM Krug, E Naschberger, ... International Journal of Molecular Sciences 24 (8), 7402, 2023 | | 2023 |
Francesca FinotelloUniversity of Innsbruck, AustriaBestätigte E-Mail-Adresse bei uibk.ac.at
