| ABACAS: algorithm-based automatic contiguation of assembled sequences S Assefa, TM Keane, TD Otto, C Newbold, M Berriman Bioinformatics 25 (15), 1968-1969, 2009 | 533 | 2009 |
| Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ... PLoS pathogens 7 (9), e1002219, 2011 | 460 | 2011 |
| New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq TD Otto, D Wilinski, S Assefa, TM Keane, LR Sarry, U Böhme, J Lemieux, ... Molecular microbiology 76 (1), 12-24, 2010 | 460 | 2010 |
| A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi TT Perkins, RA Kingsley, MC Fookes, PP Gardner, KD James, L Yu, ... PLoS genetics 5 (7), e1000569, 2009 | 284 | 2009 |
| Generating synthetic data in finance: opportunities, challenges and pitfalls SA Assefa, D Dervovic, M Mahfouz, RE Tillman, P Reddy, M Veloso Proceedings of the First ACM International Conference on AI in Finance, 1-8, 2020 | 228 | 2020 |
| A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains MD Preston, S Campino, SA Assefa, DF Echeverry, H Ocholla, ... Nature communications 5 (1), 4052, 2014 | 145 | 2014 |
| A simple method for directional transcriptome sequencing using Illumina technology NJ Croucher, MC Fookes, TT Perkins, DJ Turner, SB Marguerat, T Keane, ... Nucleic acids research 37 (22), e148-e148, 2009 | 135 | 2009 |
| Simulation intelligence: Towards a new generation of scientific methods A Lavin, D Krakauer, H Zenil, J Gottschlich, T Mattson, J Brehmer, ... arXiv preprint arXiv:2112.03235, 2021 | 124 | 2021 |
| Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi S Assefa, C Lim, MD Preston, CW Duffy, MB Nair, SA Adroub, KA Kadir, ... Proceedings of the National Academy of Sciences 112 (42), 13027-13032, 2015 | 103 | 2015 |
| Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species PCS Divis, B Singh, F Anderios, S Hisam, A Matusop, CH Kocken, ... PLoS Pathogens 11 (5), e1004888, 2015 | 97 | 2015 |
| Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing TG Clark, K Mallard, F Coll, M Preston, S Assefa, D Harris, S Ogwang, ... PloS one 8 (12), e83012, 2013 | 96 | 2013 |
| Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium falciparum in Kenya S Borrmann, J Straimer, L Mwai, A Abdi, A Rippert, J Okombo, S Muriithi, ... Scientific reports 3 (1), 3318, 2013 | 86 | 2013 |
| Culture adaptation of malaria parasites selects for convergent loss-of-function mutants A Claessens, M Affara, SA Assefa, DP Kwiatkowski, DJ Conway Scientific reports 7 (1), 41303, 2017 | 79 | 2017 |
| estMOI: estimating multiplicity of infection using parasite deep sequencing data SA Assefa, MD Preston, S Campino, H Ocholla, CJ Sutherland, TG Clark Bioinformatics 30 (9), 1292-1294, 2014 | 75 | 2014 |
| Evolutionary analysis of the most polymorphic gene family in falciparum malaria TD Otto, SA Assefa, U Böhme, MJ Sanders, D Kwiatkowski, M Berriman, ... Wellcome Open Research 4, 2019 | 70 | 2019 |
| Copula flows for synthetic data generation S Kamthe, S Assefa, M Deisenroth arXiv preprint arXiv:2101.00598, 2021 | 63 | 2021 |
| Drug-Resistant Genotypes and Multi-Clonality in Plasmodium falciparum Analysed by Direct Genome Sequencing from Peripheral Blood of Malaria Patients T Robinson, SG Campino, S Auburn, SA Assefa, SD Polley, M Manske, ... PloS one 6 (8), e23204, 2011 | 59 | 2011 |
| Whole-Genome Scans Provide Evidence of Adaptive Evolution in Malawian Plasmodium falciparum Isolates H Ocholla, MD Preston, M Mipando, ATR Jensen, S Campino, B MacInnis, ... The Journal of infectious diseases 210 (12), 1991-2000, 2014 | 58 | 2014 |
| Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity CW Duffy, SA Assefa, J Abugri, N Amoako, S Owusu-Agyei, T Anyorigiya, ... BMC genomics 16, 1-11, 2015 | 44 | 2015 |
| Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution CW Duffy, H Ba, S Assefa, AD Ahouidi, YB Deh, A Tandia, FCM Kirsebom, ... Molecular ecology 26 (11), 2880-2894, 2017 | 34 | 2017 |
