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Vineet Bafna
Vineet Bafna
Professor, Computer Science & Engineering, University of California, San Diego
Bestätigte E-Mail-Adresse bei cs.ucsd.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
202132001
An integrated map of genetic variation from 1,092 human genomes
1000 Genomes Project Consortium
Nature 491 (7422), 56, 2012
82282012
The diploid genome sequence of an individual human
S Levy, G Sutton, PC Ng, L Feuk, AL Halpern, BP Walenz, N Axelrod, ...
PLoS biology 5 (10), e254, 2007
23052007
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ...
PLoS biology 5 (3), e16, 2007
10042007
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
8872016
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
KJ McKernan, HE Peckham, GL Costa, SF McLaughlin, Y Fu, EF Tsung, ...
Genome research 19 (9), 1527-1541, 2009
7982009
Human beta-defensin 2 is a salt-sensitive peptide antibiotic expressed in human lung.
R Bals, X Wang, Z Wu, T Freeman, V Bafna, M Zasloff, JM Wilson
The Journal of clinical investigation 102 (5), 874-880, 1998
7871998
The dog genome: survey sequencing and comparative analysis
EF Kirkness, V Bafna, AL Halpern, S Levy, K Remington, DB Rusch, ...
Science 301 (5641), 1898-1903, 2003
7282003
Genome rearrangements and sorting by reversals
V Bafna, PA Pevzner
SIAM Journal on computing 25 (2), 272-289, 1996
7261996
InsPecT: identification of posttranslationally modified peptides from tandem mass spectra
S Tanner, H Shu, A Frank, LC Wang, E Zandi, M Mumby, PA Pevzner, ...
Analytical chemistry 77 (14), 4626-4639, 2005
7092005
De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly
JH Lee, M Huynh, JL Silhavy, S Kim, T Dixon-Salazar, A Heiberg, E Scott, ...
Nature genetics 44 (8), 941-945, 2012
6952012
A multidimensional chromatography technology for in-depth phosphoproteome analysis
CP Albuquerque, MB Smolka, SH Payne, V Bafna, J Eng, H Zhou
Molecular & Cellular Proteomics 7 (7), 1389-1396, 2008
6532008
Sorting by transpositions
V Bafna, PA Pevzner
SIAM Journal on Discrete Mathematics 11 (2), 224-240, 1998
6511998
Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity
KM Turner, V Deshpande, D Beyter, T Koga, J Rusert, C Lee, B Li, ...
Nature 543 (7643), 122-125, 2017
6082017
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
GC Hon, RD Hawkins, OL Caballero, C Lo, R Lister, M Pelizzola, ...
Genome research 22 (2), 246-258, 2012
5862012
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 3934, 2014
4342014
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
4232013
Circular ecDNA promotes accessible chromatin and high oncogene expression
S Wu, KM Turner, N Nguyen, R Raviram, M Erb, J Santini, J Luebeck, ...
Nature 575 (7784), 699-703, 2019
3842019
A 2-approximation algorithm for the undirected feedback vertex set problem
V Bafna, P Berman, T Fujito
SIAM Journal on Discrete Mathematics 12 (3), 289-297, 1999
3811999
Identification of post-translational modifications via blind search of mass-spectra
D Tsur, S Tanner, E Zandi, V Bafna, PA Pevzner
2005 IEEE Computational Systems Bioinformatics Conference (CSB'05), 157-166, 2005
3612005
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