Iakes Ezkurdia
Iakes Ezkurdia
Spanish National Cardiovascular Research Center CNIC
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Zitiert von
Zitiert von
An integrated encyclopedia of DNA elements in the human genome.
EP Consortium
Nature 489 (7414), 57, 2012
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ...
Human molecular genetics 23 (22), 5866-5878, 2014
Structural bioinformatics
J Gu, PE Bourne
John Wiley & Sons, 2009
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
M Tardaguila, L De La Fuente, C Marti, C Pereira, FJ Pardo-Palacios, ...
Genome research 28 (3), 396-411, 2018
APPRIS: annotation of principal and alternative splice isoforms
JM Rodriguez, P Maietta, I Ezkurdia, A Pietrelli, JJ Wesselink, G Lopez, ...
Nucleic acids research 41 (D1), D110-D117, 2013
Progress and challenges in predicting protein–protein interaction sites
I Ezkurdia, L Bartoli, P Fariselli, R Casadio, A Valencia, ML Tress
Briefings in bioinformatics 10 (3), 233-246, 2009
Mechanism of super-assembly of respiratory complexes III and IV
S Cogliati, E Calvo, M Loureiro, AM Guaras, R Nieto-Arellano, ...
Nature 539 (7630), 579-582, 2016
Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts
M Frenkel-Morgenstern, V Lacroix, I Ezkurdia, Y Levin, A Gabashvili, ...
Genome research 22 (7), 1231-1242, 2012
Assessment of predictions submitted for the CASP6 comparative modeling category
M Tress, I Ezkurdia, O Graña, G López, A Valencia
Proteins: Structure, Function, and Bioinformatics 61 (S7), 27-45, 2005
Most highly expressed protein-coding genes have a single dominant isoform
I Ezkurdia, JM Rodriguez, E Carrillo-de Santa Pau, J Vázquez, A Valencia, ...
Journal of proteome research 14 (4), 1880-1887, 2015
Analyzing the first drafts of the human proteome
I Ezkurdia, J Vázquez, A Valencia, M Tress
Journal of proteome research 13 (8), 3854-3855, 2014
Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function
I Ezkurdia, A del Pozo, A Frankish, JM Rodriguez, J Harrow, K Ashman, ...
Molecular biology and evolution 29 (9), 2265-2283, 2012
Alternatively spliced homologous exons have ancient origins and are highly expressed at the protein level
F Abascal, I Ezkurdia, J Rodriguez-Rivas, JM Rodriguez, A del Pozo, ...
PLoS computational biology 11 (6), e1004325, 2015
Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8
I Ezkurdia, O Grana, JMG Izarzugaza, ML Tress
Proteins: Structure, Function, and Bioinformatics 77 (S9), 196-209, 2009
Targeted proteome investigation via selected reaction monitoring mass spectrometry
A Maiolica, MA Jünger, I Ezkurdia, R Aebersold
Journal of proteomics 75 (12), 3495-3513, 2012
Assessment of predictions submitted for the CASP7 domain prediction category
M Tress, J Cheng, P Baldi, K Joo, J Lee, JH Seo, J Lee, D Baker, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 137-151, 2007
SanXoT: a modular and versatile package for the quantitative analysis of high-throughput proteomics experiments
M Trevisan-Herraz, N Bagwan, F García-Marqués, JM Rodriguez, I Jorge, ...
Bioinformatics 35 (9), 1594-1596, 2019
Comprehensive quantification of the modified proteome reveals oxidative heart damage in mitochondrial heteroplasmy
N Bagwan, E Bonzon-Kulichenko, E Calvo, AV Lechuga-Vieco, ...
Cell Reports 23 (12), 3685-3697. e4, 2018
Quantitative HDL proteomics identifies peroxiredoxin-6 as a biomarker of human abdominal aortic aneurysm
E Burillo, I Jorge, D Martínez-López, E Camafeita, LM Blanco-Colio, ...
Scientific reports 6 (1), 38477, 2016
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