| Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins P Hu, SC Janga, M Babu, JJ Díaz-Mejía, G Butland, W Yang, O Pogoutse, ... PLoS biology 7 (4), e1000096, 2009 | 452 | 2009 |
| eSGA: E. coli synthetic genetic array analysis G Butland, M Babu, JJ Díaz-Mejía, F Bohdana, S Phanse, B Gold, W Yang, ... Nature methods 5 (9), 789-795, 2008 | 321 | 2008 |
| Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways M Babu, JJ Díaz-Mejía, J Vlasblom, A Gagarinova, S Phanse, C Graham, ... PLoS genetics 7 (11), e1002377, 2011 | 142 | 2011 |
| Failure of human rhombic lip differentiation underlies medulloblastoma formation LD Hendrikse, P Haldipur, O Saulnier, J Millman, AH Sjoboen, ... Nature 609 (7929), 1021-1028, 2022 | 117 | 2022 |
| The Escherichia coli Phosphotyrosine Proteome Relates to Core Pathways and Virulence AM Hansen, R Chaerkady, J Sharma, JJ Díaz-Mejía, N Tyagi, S Renuse, ... PLoS pathogens 9 (6), e1003403, 2013 | 90 | 2013 |
| Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome JJ Díaz-Mejía, M Babu, A Emili FEMS Microbiology Reviews 33 (1), 66-97, 2008 | 83 | 2008 |
| An analysis of the evolutionary relationships of integron integrases, with emphasis on the prevalence of class 1 integrons in Escherichia coli isolates from clinical and … JJ Diaz-Mejia, CF Amabile-Cuevas, I Rosas, V Souza Microbiology 154 (1), 94-102, 2008 | 77 | 2008 |
| Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data JJ Diaz-Mejia, EC Meng, AR Pico, SA MacParland, T Ketela, TJ Pugh, ... F1000Research 8, ISCB Comm J-296, 2019 | 76 | 2019 |
| Characterization of the NifA-RpoN Regulon in Rhizobium etli in Free Life and in Symbiosis with Phaseolus vulgaris E Salazar, JJ Díaz-Mejía, G Moreno-Hagelsieb, G Martínez-Batallar, ... Applied and environmental microbiology 76 (13), 4510-4520, 2010 | 75 | 2010 |
| A network perspective on the evolution of metabolism by gene duplication JJ Díaz-Mejía, E Pérez-Rueda, L Segovia Genome biology 8, 1-10, 2007 | 67 | 2007 |
| Network-based function prediction and interactomics: the case for metabolic enzymes SC Janga, JJ Díaz-Mejía, G Moreno-Hagelsieb Metabolic Engineering 13 (1), 1-10, 2011 | 59 | 2011 |
| The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolution G Hernández-Montes, JJ Díaz-Mejía, E Pérez-Rueda, L Segovia Genome biology 9, 1-15, 2008 | 53 | 2008 |
| Antitumor immune effects of preoperative sitravatinib and nivolumab in oral cavity cancer: SNOW window-of-opportunity study M Oliva, D Chepeha, DV Araujo, JJ Diaz-Mejia, P Olson, A Prawira, ... Journal for Immunotherapy of Cancer 9 (10), e003476, 2021 | 42 | 2021 |
| Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes M Babu, G Musso, JJ Díaz-Mejía, G Butland, JF Greenblatt, A Emili Molecular BioSystems 5 (12), 1439-1455, 2009 | 39 | 2009 |
| Mapping DNA damage‐dependent genetic interactions in yeast via party mating and barcode fusion genetics JJ Díaz‐Mejía, A Celaj, JC Mellor, A Coté, A Balint, B Ho, P Bansal, ... Molecular Systems Biology 14 (5), e7985, 2018 | 31 | 2018 |
| CReSCENT: cancer single cell expression toolkit S Mohanraj, JJ Díaz-Mejía, MD Pham, H Elrick, M Husić, S Rashid, P Luo, ... Nucleic acids research 48 (W1), W372-W379, 2020 | 23 | 2020 |
| Differential activities of the SoxR protein of Escherichia coli: SoxS is not required for gene activation under iron deprivation AM Fuentes, JJ Díaz-Mejía, R Maldonado-Rodríguez, ... FEMS microbiology letters 201 (2), 271-275, 2001 | 21 | 2001 |
| Antibiotic resistance in oral commensal streptococci from healthy Mexicans and Cubans: resistance prevalence does not mirror antibiotic usage JJ Díaz-Mejía, A Carbajal-Saucedo, CF Amábile-Cuevas FEMS Microbiology Letters 217 (2), 173-176, 2002 | 18 | 2002 |
| Immunophenotypic correlates of sustained MRD negativity in patients with multiple myeloma DG Coffey, F Maura, E Gonzalez-Kozlova, JJ Diaz-Mejia, P Luo, Y Zhang, ... Nature communications 14 (1), 5335, 2023 | 17 | 2023 |
| A comparison of data integration methods for single-cell RNA sequencing of cancer samples LM Richards, M Riverin, S Mohanraj, S Ayyadhury, DC Croucher, ... bioRxiv, 2021.08. 04.453579, 2021 | 10 | 2021 |
