Folgen
Yoshiki Vázquez-Baeza
Yoshiki Vázquez-Baeza
BiomeSense
Bestätigte E-Mail-Adresse bei biomesense.com - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
131982019
The treatment-naive microbiome in new-onset Crohn’s disease
D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ...
Cell host & microbe 15 (3), 382-392, 2014
32222014
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
21862017
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
J Lloyd-Price, C Arze, AN Ananthakrishnan, M Schirmer, J Avila-Pacheco, ...
Nature 569 (7758), 655-662, 2019
18942019
Normalization and microbial differential abundance strategies depend upon data characteristics
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
Microbiome 5, 1-18, 2017
17182017
EMPeror: a tool for visualizing high-throughput microbial community data
Y Vázquez-Baeza, M Pirrung, A Gonzalez, R Knight
Gigascience 2 (1), 2047-217X-2-16, 2013
12102013
Dynamics of the human gut microbiome in inflammatory bowel disease
J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ...
Nature microbiology 2 (5), 1-7, 2017
10532017
Longitudinal analysis of microbial interaction between humans and the indoor environment
S Lax, DP Smith, J Hampton-Marcell, SM Owens, KM Handley, NM Scott, ...
Science 345 (6200), 1048-1052, 2014
9382014
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
9222018
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
6482018
Advancing our understanding of the human microbiome using QIIME
JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ...
Methods in enzymology 531, 371-444, 2013
6342013
Qiita: rapid, web-enabled microbiome meta-analysis
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...
Nature methods 15 (10), 796-798, 2018
5242018
Meta-analyses of studies of the human microbiota
CA Lozupone, J Stombaugh, A Gonzalez, G Ackermann, D Wendel, ...
Genome research 23 (10), 1704-1714, 2013
4842013
Temporal variability is a personalized feature of the human microbiome
GE Flores, JG Caporaso, JB Henley, JR Rideout, D Domogala, J Chase, ...
Genome biology 15, 1-13, 2014
4312014
HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats
P Lin, M Bach, M Asquith, AY Lee, L Akileswaran, P Stauffer, S Davin, ...
PloS one 9 (8), e105684, 2014
2902014
Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection
A Weingarden, A González, Y Vázquez-Baeza, S Weiss, G Humphry, ...
Microbiome 3, 1-8, 2015
2682015
Microbiome 101: studying, analyzing, and interpreting gut microbiome data for clinicians
C Allaband, D McDonald, Y Vázquez-Baeza, JJ Minich, A Tripathi, ...
Clinical gastroenterology and hepatology 17 (2), 218-230, 2019
2662019
QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data
M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ...
Current protocols in bioinformatics 70 (1), e100, 2020
2592020
Learning representations of microbe–metabolite interactions
JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ...
Nature methods 16 (12), 1306-1314, 2019
2342019
Balance trees reveal microbial niche differentiation
JT Morton, J Sanders, RA Quinn, D McDonald, A Gonzalez, ...
MSystems 2 (1), e00162-16, 2017
2222017
Das System kann den Vorgang jetzt nicht ausführen. Versuchen Sie es später erneut.
Artikel 1–20