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Pedro T. Monteiro
Pedro T. Monteiro
INESC-ID / IST - Universidade de Lisboa
Bestätigte E-Mail-Adresse bei tecnico.ulisboa.pt - Startseite
Titel
Zitiert von
Zitiert von
Jahr
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
MC Teixeira, P Monteiro, P Jain, S Tenreiro, AR Fernandes, NP Mira, ...
Nucleic acids research 34 (suppl 1), D446-D451, 2006
6312006
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço
BMC bioinformatics 13 (1), 1-10, 2012
5962012
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
2862014
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
2592020
Logical modeling and dynamical analysis of cellular networks
W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ...
Frontiers in genetics 7, 94, 2016
2592016
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenço, ...
Nucleic acids research 39 (suppl 1), D136-D140, 2011
2402011
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts
PT Monteiro, J Oliveira, P Pais, M Antunes, M Palma, M Cavalheiro, ...
Nucleic Acids Research 48 (D1), D642-D649, 2020
2052020
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
PT Monteiro, ND Mendes, MC Teixeira, S d’Orey, S Tenreiro, NP Mira, ...
Nucleic acids research 36 (suppl 1), D132-D136, 2008
2032008
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 135, 2013
2002013
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, M Palma, C Costa, CP Godinho, P Pais, ...
Nucleic acids research 46 (D1), D348-D353, 2018
1932018
Temporal logic patterns for querying dynamic models of cellular interaction networks
PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong
Bioinformatics 24 (16), i227-i233, 2008
1192008
Model checking to assess T-helper cell plasticity
W Abou-Jaoudé, PT Monteiro, A Naldi, M Grandclaudon, V Soumelis, ...
Frontiers in bioengineering and biotechnology 2, 86, 2015
1162015
The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks
A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ...
Frontiers in physiology 9, 680, 2018
1052018
Cooperative development of logical modelling standards and tools with CoLoMoTo
A Naldi, PT Monteiro, C Müssel, HA Kestler, D Thieffry, I Xenarios, ...
Bioinformatics 31 (7), 1154-1159, 2015
104*2015
Logical modeling and analysis of cellular regulatory networks with ginsim 3.0
A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ...
Frontiers in physiology 9, 646, 2018
1022018
Efficient parameter search for qualitative models of regulatory networks using symbolic model checking
G Batt, M Page, I Cantone, G Goessler, P Monteiro, H De Jong
Bioinformatics 26 (18), i603-i610, 2010
902010
Dynamical modeling and analysis of large cellular regulatory networks
D Bérenguier, C Chaouiya, PT Monteiro, A Naldi, E Remy, D Thieffry, ...
Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 2013
862013
YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis
MC Teixeira, R Viana, M Palma, J Oliveira, M Galocha, MN Mota, ...
Nucleic Acids Research 51 (D1), D785-D791, 2023
532023
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts
PT Monteiro, P Pais, C Costa, S Manna, I Sá-Correia, MC Teixeira
Nucleic acids research 45 (D1), D597-D603, 2017
492017
Hybrid Epithelial–Mesenchymal Phenotypes Are Controlled by Microenvironmental Factors
G Selvaggio, S Canato, A Pawar, PT Monteiro, PS Guerreiro, MM Brás, ...
Cancer Research 80 (11), 2407-2420, 2020
472020
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