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Daniele De Martino
Daniele De Martino
Biofisika Institute - Ikerbasque
Bestätigte E-Mail-Adresse bei ehu.eus
Titel
Zitiert von
Zitiert von
Jahr
Congestion phenomena on complex networks
D De Martino, L Dall’Asta, G Bianconi, M Marsili
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 79 (1 …, 2009
1602009
An introduction to the maximum entropy approach and its application to inference problems in biology
A De Martino, D De Martino
Heliyon 4 (4), 2018
1102018
Uniform sampling of steady states in metabolic networks: heterogeneous scales and rounding
D De Martino, M Mori, V Parisi
PloS one 10 (4), e0122670, 2015
662015
Counting and correcting thermodynamically infeasible flux cycles in genome-scale metabolic networks
D De Martino, F Capuani, M Mori, A De Martino, E Marinari
Metabolites 3 (4), 946-966, 2013
582013
Statistical mechanics for metabolic networks during steady state growth
D De Martino, A Mc Andersson, T Bergmiller, CC Guet, G Tkačik
Nature communications 9 (1), 2988, 2018
552018
Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli
D De Martino, F Capuani, A De Martino
Physical biology 13 (3), 036005, 2016
532016
A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks
D De Martino, M Figliuzzi, A De Martino, E Marinari
PLoS computational biology 8 (6), e1002562, 2012
432012
Dynamic facilitation picture of a higher-order glass singularity
M Sellitto, D De Martino, F Caccioli, JJ Arenzon
Physical review letters 105 (26), 265704, 2010
372010
A minimal model for congestion phenomena on complex networks
D De Martino, L Dall’Asta, G Bianconi, M Marsili
Journal of Statistical Mechanics: Theory and Experiment 2009 (08), P08023, 2009
282009
Phase transitions in crowd dynamics of resource allocation
A Ghosh, D De Martino, A Chatterjee, M Marsili, BK Chakrabarti
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 85 (2 …, 2012
272012
Quantifying the entropic cost of cellular growth control
D De Martino, F Capuani, A De Martino
Physical Review E 96 (1), 010401, 2017
232017
Thermodynamics of biochemical networks and duality theorems
D De Martino
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 87 (5 …, 2013
212013
Identifying all moiety conservation laws in genome-scale metabolic networks
A De Martino, D De Martino, R Mulet, A Pagnani
PloS one 9 (7), e100750, 2014
182014
Shear-and vibration-induced order-disorder transitions in granular media
M Pica Ciamarra, A Coniglio, D De Martino, M Nicodemi
The European Physical Journal E 24, 411-415, 2007
182007
Quantitative constraint-based computational model of tumor-to-stroma coupling via lactate shuttle
F Capuani, D De Martino, E Marinari, A De Martino
Scientific reports 5 (1), 11880, 2015
172015
Relationship between fitness and heterogeneity in exponentially growing microbial populations
AP Muntoni, A Braunstein, A Pagnani, D De Martino, A De Martino
Biophysical Journal 121 (10), 1919-1930, 2022
132022
Quantifying the coexistence of neuronal oscillations and avalanches
F Lombardi, S Pepic, O Shriki, G Tkačik, D De Martino
13*2021
Oscillations in feedback-driven systems: Thermodynamics and noise
D De Martino, AC Barato
Physical Review E 100 (6), 062123, 2019
122019
Feedback-induced self-oscillations in large interacting systems subjected to phase transitions
D De Martino
Journal of Physics A: Mathematical and Theoretical 52 (4), 045002, 2019
122019
Unbiased metabolic flux inference through combined thermodynamic and 13C flux analysis
J Saldida, AP Muntoni, D de Martino, G Hubmann, B Niebel, AM Schmidt, ...
bioRxiv, 2020.06. 29.177063, 2020
112020
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