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Javier Vargas
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DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
R Sanchez-Garcia, J Gomez-Blanco, A Cuervo, JM Carazo, COS Sorzano, ...
Communications biology 4 (1), 874, 2021
6482021
Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
JM De la Rosa-Trevin, A Quintana, L Del Cano, A Zaldívar, I Foche, ...
Journal of structural biology 195 (1), 93-99, 2016
5272016
A survey of dimensionality reduction techniques
COS Sorzano, J Vargas, AP Montano
arXiv preprint arXiv:1403.2877, 2014
4892014
Xmipp 3.0: an improved software suite for image processing in electron microscopy
JM De la Rosa-Trevín, J Otón, R Marabini, A Zaldívar, J Vargas, ...
Journal of structural biology 184 (2), 321-328, 2013
3152013
Phase-shifting interferometry based on principal component analysis
J Vargas, JA Quiroga, T Belenguer
Optics letters 36 (8), 1326-1328, 2011
2382011
MonoRes: automatic and accurate estimation of local resolution for electron microscopy maps
JL Vilas, J Gómez-Blanco, P Conesa, R Melero, JM de la Rosa-Trevín, ...
Structure 26 (2), 337-344. e4, 2018
1962018
Two-step demodulation based on the Gram–Schmidt orthonormalization method
J Vargas, JA Quiroga, COS Sorzano, JC Estrada, JM Carazo
Optics letters 37 (3), 443-445, 2012
1952012
Two-step interferometry by a regularized optical flow algorithm
J Vargas, JA Quiroga, COS Sorzano, JC Estrada, JM Carazo
Optics letters 36 (17), 3485-3487, 2011
1472011
Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ
RI Koning, J Gomez-Blanco, I Akopjana, J Vargas, A Kazaks, K Tars, ...
Nature communications 7 (1), 12524, 2016
1342016
Automatic local resolution-based sharpening of cryo-EM maps
E Ramírez-Aportela, JL Vilas, A Glukhova, R Melero, P Conesa, ...
Bioinformatics 36 (3), 765-772, 2020
1272020
Analysis of the principal component algorithm in phase-shifting interferometry
J Vargas, JA Quiroga, T Belenguer
Optics letters 36 (12), 2215-2217, 2011
1172011
Separating actin-dependent chemokine receptor nanoclustering from dimerization indicates a role for clustering in CXCR4 signaling and function
L Martínez-Muñoz, JM Rodríguez-Frade, R Barroso, CÓS Sorzano, ...
Molecular cell 70 (1), 106-119. e10, 2018
902018
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs
V Abrishami, A Zaldívar-Peraza, JM de la Rosa-Trevín, J Vargas, J Otón, ...
Bioinformatics 29 (19), 2460-2468, 2013
862013
Two-step self-tuning phase-shifting interferometry
J Vargas, JA Quiroga, T Belenguer, M Servín, JC Estrada
Optics express 19 (2), 638-648, 2011
772011
Alignment of direct detection device micrographs using a robust Optical Flow approach
V Abrishami, J Vargas, X Li, Y Cheng, R Marabini, CÓS Sorzano, ...
Journal of structural biology 189 (3), 163-176, 2015
752015
Efficient initial volume determination from electron microscopy images of single particles
J Vargas, AL Alvarez-Cabrera, R Marabini, JM Carazo, COS Sorzano
Bioinformatics 30 (20), 2891-2898, 2014
742014
Spatial carrier phase-shifting algorithm based on principal component analysis method
Y Du, G Feng, H Li, J Vargas, S Zhou
Optics Express 20 (15), 16471-16479, 2012
712012
Fast two-dimensional simultaneous phase unwrapping and low-pass filtering
MA Navarro, JC Estrada, M Servin, JA Quiroga, J Vargas
Optics express 20 (3), 2556-2561, 2012
702012
Generalization of the principal component analysis algorithm for interferometry
J Vargas, COS Sorzano, JC Estrada, JM Carazo
Optics Communications 286, 130-134, 2013
692013
Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins
M Ichikawa, AAZ Khalifa, S Kubo, D Dai, K Basu, MAF Maghrebi, J Vargas, ...
Proceedings of the National Academy of Sciences 116 (40), 19930-19938, 2019
652019
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