| Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... Cell reports 18 (1), 248-262, 2017 | 3146 | 2017 |
| CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes M Efremova, M Vento-Tormo, SA Teichmann, R Vento-Tormo Nature protocols 15 (4), 1484-1506, 2020 | 1883 | 2020 |
| Single-cell reconstruction of the early maternal–fetal interface in humans R Vento-Tormo, M Efremova, RA Botting, MY Turco, M Vento-Tormo, ... Nature 563 (7731), 347-353, 2018 | 1667 | 2018 |
| Resolving the fibrotic niche of human liver cirrhosis at single-cell level P Ramachandran, R Dobie, JR Wilson-Kanamori, EF Dora, ... Nature 575 (7783), 512-518, 2019 | 1037 | 2019 |
| A survey of tools for variant analysis of next-generation genome sequencing data S Pabinger, A Dander, M Fischer, R Snajder, M Sperk, M Efremova, ... Briefings in bioinformatics 15 (2), 256-278, 2014 | 758 | 2014 |
| A cellular census of human lungs identifies novel cell states in health and in asthma FA Vieira Braga, G Kar, M Berg, OA Carpaij, K Polanski, LM Simon, ... Nature medicine 25 (7), 1153-1163, 2019 | 725 | 2019 |
| Decoding human fetal liver haematopoiesis DM Popescu, RA Botting, E Stephenson, K Green, S Webb, L Jardine, ... Nature 574 (7778), 365-371, 2019 | 435 | 2019 |
| Spatiotemporal immune zonation of the human kidney BJ Stewart, JR Ferdinand, MD Young, TJ Mitchell, KW Loudon, AM Riding, ... Science 365 (6460), 1461-1466, 2019 | 316 | 2019 |
| Developmental cell programs are co-opted in inflammatory skin disease G Reynolds, P Vegh, J Fletcher, EFM Poyner, E Stephenson, I Goh, ... Science 371 (6527), eaba6500, 2021 | 283 | 2021 |
| Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution M Efremova, D Rieder, V Klepsch, P Charoentong, F Finotello, H Hackl, ... Nature communications 9 (1), 32, 2018 | 259 | 2018 |
| Single-cell RNA sequencing reveals a dynamic stromal niche that supports tumor growth S Davidson, M Efremova, A Riedel, B Mahata, J Pramanik, J Huuhtanen, ... Cell reports 31 (7), 2020 | 207 | 2020 |
| Neoantigens generated by individual mutations and their role in cancer immunity and immunotherapy M Efremova, F Finotello, D Rieder, Z Trajanoski Frontiers in immunology 8, 311621, 2017 | 205 | 2017 |
| Pancancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade. Cell Rep. 2017; 18: 248–62 P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... | 175 | 2010 |
| Computational methods for single-cell omics across modalities M Efremova, SA Teichmann Nature methods 17 (1), 14-17, 2020 | 169 | 2020 |
| Single-cell sequencing reveals clonal expansions of pro-inflammatory synovial CD8 T cells expressing tissue-homing receptors in psoriatic arthritis F Penkava, MDC Velasco-Herrera, MD Young, N Yager, LN Nwosu, ... Nature communications 11 (1), 4767, 2020 | 121 | 2020 |
| Blood and immune development in human fetal bone marrow and Down syndrome L Jardine, S Webb, I Goh, M Quiroga Londoño, G Reynolds, M Mather, ... Nature 598 (7880), 327-331, 2021 | 77 | 2021 |
| Mosquito cellular immunity at single-cell resolution G Raddi, ABF Barletta, M Efremova, JL Ramirez, R Cantera, ... Science 369 (6507), 1128-1132, 2020 | 74 | 2020 |
| Immunology in the era of single-cell technologies M Efremova, R Vento-Tormo, JE Park, SA Teichmann, KR James Annual Review of Immunology 38, 727-757, 2020 | 65 | 2020 |
| Bioinformatics for cancer immunology and immunotherapy P Charoentong, M Angelova, M Efremova, R Gallasch, H Hackl, J Galon, ... Cancer Immunology, Immunotherapy 61, 1885-1903, 2012 | 62 | 2012 |
| Method of the year 2019: single-cell multimodal omics S Teichmann, M Efremova Nat. Methods 17 (1), 2020, 2020 | 54 | 2020 |
