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Nikolaos G. Sgourakis
Nikolaos G. Sgourakis
Bestätigte E-Mail-Adresse bei pennmedicine.upenn.edu - Startseite
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Zitiert von
Zitiert von
Jahr
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
5882020
The Alzheimer’s peptides Aβ40 and 42 adopt distinct conformations in water: a combined MD/NMR study
NG Sgourakis, Y Yan, SA McCallum, C Wang, AE Garcia
Journal of molecular biology 368 (5), 1448-1457, 2007
5122007
Atomic model of the type III secretion system needle
A Loquet, NG Sgourakis, R Gupta, K Giller, D Riedel, C Goosmann, ...
Nature 486 (7402), 276-279, 2012
3972012
Atomic-level characterization of the ensemble of the Aβ (1–42) monomer in water using unbiased molecular dynamics simulations and spectral algorithms
NG Sgourakis, M Merced-Serrano, C Boutsidis, P Drineas, Z Du, C Wang, ...
Journal of molecular biology 405 (2), 570-583, 2011
2412011
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
OF Lange, P Rossi, NG Sgourakis, Y Song, HW Lee, JM Aramini, ...
Proceedings of the National Academy of Sciences 109 (27), 10873-10878, 2012
2262012
Programmable design of orthogonal protein heterodimers
Z Chen, SE Boyken, M Jia, F Busch, D Flores-Solis, MJ Bick, P Lu, ...
Nature 565 (7737), 106-111, 2019
1802019
High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy
JP Demers, B Habenstein, A Loquet, S Kumar Vasa, K Giller, S Becker, ...
Nature communications 5 (1), 4976, 2014
1312014
De novo design of a non-local β-sheet protein with high stability and accuracy
E Marcos, TM Chidyausiku, AC McShan, T Evangelidis, S Nerli, L Carter, ...
Nature structural & molecular biology 25 (11), 1028-1034, 2018
1192018
Modeling an in-register, parallel “iowa” aβ fibril structure using solid-state NMR data from labeled samples with rosetta
NG Sgourakis, WM Yau, W Qiang
Structure 23 (1), 216-227, 2015
1112015
The NMR–Rosetta capsid model of M13 bacteriophage reveals a quadrupled hydrophobic packing epitope
O Morag, NG Sgourakis, D Baker, A Goldbourt
Proceedings of the National Academy of Sciences 112 (4), 971-976, 2015
1062015
RETRACTED ARTICLE: Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs
M Yarmarkovich, QF Marshall, JM Warrington, R Premaratne, A Farrel, ...
Nature 599 (7885), 477-484, 2021
952021
A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly
JRC Bergeron, LJ Worrall, NG Sgourakis, F DiMaio, RA Pfuetzner, ...
PLoS pathogens 9 (4), e1003307, 2013
822013
Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings
NG Sgourakis, OF Lange, F DiMaio, I André, NC Fitzkee, P Rossi, ...
Journal of the American Chemical Society 133 (16), 6288-6298, 2011
812011
Peptide exchange on MHC-I by TAPBPR is driven by a negative allostery release cycle
AC McShan, K Natarajan, VK Kumirov, D Flores-Solis, J Jiang, ...
Nature chemical biology 14 (8), 811-820, 2018
792018
An allosteric site in the T-cell receptor Cβ domain plays a critical signalling role
K Natarajan, AC McShan, J Jiang, VK Kumirov, R Wang, H Zhao, ...
Nature communications 8 (1), 15260, 2017
742017
The Common Structural Architecture of Shigella flexneri and Salmonella typhimurium Type Three Secretion Needles
JP Demers, NG Sgourakis, R Gupta, A Loquet, K Giller, D Riedel, B Laube, ...
PLoS pathogens 9 (3), e1003245, 2013
742013
A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models
NG Sgourakis, PG Bagos, PK Papasaikas, SJ Hamodrakas
BMC bioinformatics 6, 1-12, 2005
712005
The role of molecular flexibility in antigen presentation and T cell receptor-mediated signaling
K Natarajan, J Jiang, NA May, MG Mage, LF Boyd, AC McShan, ...
Frontiers in immunology 9, 1657, 2018
702018
Chemical shift-based methods in NMR structure determination
S Nerli, AC McShan, NG Sgourakis
Progress in nuclear magnetic resonance spectroscopy 106, 1-25, 2018
612018
Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks
NG Sgourakis, PG Bagos, SJ Hamodrakas
Bioinformatics 21 (22), 4101-4106, 2005
592005
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