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Bikram Sahoo
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Non-typhoidal Salmonella DNA traces in gallbladder cancer
P Iyer, SG Barreto, B Sahoo, P Chandrani, MR Ramadwar, ...
Infectious agents and cancer 11, 1-4, 2016
552016
A k-mer Based Approach for SARS-CoV-2 Variant Identification
S Ali, B Sahoo, N Ullah, A Zelikovskiy, M Patterson, I Khan
Bioinformatics Research and Applications: 17th International Symposium …, 2021
482021
ERBB2 and KRAS alterations mediate response to EGFR inhibitors in early stage gallbladder cancer
P Iyer, SV Shrikhande, M Ranjan, A Joshi, N Gardi, R Prasad, ...
International journal of cancer 144 (8), 2008-2019, 2019
442019
Combined HER3-EGFR score in triple-negative breast cancer provides prognostic and predictive significance superior to individual biomarkers
A Ogden, S Bhattarai, B Sahoo, NP Mongan, M Alsaleem, AR Green, ...
Scientific reports 10 (1), 3009, 2020
332020
The persisting puzzle of racial disparity in triple negative breast cancer: looking through a new lens
C Garlapati, S Joshi, B Sahoo, S Kapoor, R Aneja
Frontiers in Bioscience-Scholar 11 (1), 75-88, 2019
192019
From alpha to zeta: Identifying variants and subtypes of sars-cov-2 via clustering
A Melnyk, F Mohebbi, S Knyazev, B Sahoo, R Hosseini, P Skums, ...
Journal of Computational Biology 28 (11), 1113-1129, 2021
182021
Efficient approximate kernel based spike sequence classification
S Ali, B Sahoo, MA Khan, A Zelikovsky, IU Khan, M Patterson
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2022
172022
Benchmarking machine learning robustness in COVID-19 genome sequence classification
S Ali, B Sahoo, A Zelikovsky, PY Chen, M Patterson
Scientific Reports 13 (1), 4154, 2023
162023
Sensory nerves impede the formation of tertiary lymphoid structures and development of protective antimelanoma immune responses
K Vats, O Kruglov, B Sahoo, V Soman, J Zhang, GV Shurin, UR Chandran, ...
Cancer immunology research 10 (9), 1141-1154, 2022
142022
Clustering based identification of SARS-CoV-2 subtypes
A Melnyk, F Mohebbi, S Knyazev, B Sahoo, R Hosseini, P Skums, ...
International Conference on Computational Advances in Bio and Medical …, 2020
132020
TMC-SNPdb: an Indian germline variant database derived from whole exome sequences
P Upadhyay, N Gardi, S Desai, B Sahoo, A Singh, T Togar, P Iyer, ...
Database 2016, 2016
122016
Identifying cancer driver genes from functional genomics screens
T Togar, S Desai, R Mishra, P Terwadkar, M Ramteke, M Ranjan, D Kawle, ...
Swiss Medical Weekly 150 (0708), w20195-w20195, 2020
52020
Identifying biomarkers using support vector machine to understand the racial disparity in triple-negative breast cancer
B Sahoo, Z Pinnix, S Sims, A Zelikovsky
Journal of Computational Biology 30 (4), 502-517, 2023
42023
An SVM based approach to study the racial disparity in triple-negative breast cancer
B Sahoo, S Sims, A Zelikovsky
International Conference on Computational Advances in Bio and Medical …, 2021
22021
Pipeline for analyzing activity of metabolic pathways in planktonic communities using metatranscriptomic data
FM Rondel, R Hosseini, B Sahoo, S Knyazev, I Mandric, F Stewart, ...
Journal of Computational Biology 28 (8), 842-855, 2021
22021
Deep Learning Reveals Biological Basis of Racial Disparities in Quadruple-Negative Breast Cancer
B Sahoo, Z Pinnix, A Zelikovsky
International Symposium on Bioinformatics Research and Applications, 498-508, 2023
2023
Exploring Racial Disparities in Triple-Negative Breast Cancer: Insights from Feature Selection Algorithms
B Sahoo, T Adeyeha, Z Pinnix, A Zelikovsky
International Symposium on Bioinformatics Research and Applications, 487-497, 2023
2023
Assessing the Resilience of Machine Learning Classification Algorithms on SARS-CoV-2 Genome Sequences Generated with Long-Read Specific Errors
B Sahoo, S Ali, PY Chen, M Patterson, A Zelikovsky
Biomolecules 13 (6), 934, 2023
2023
Sensory Nerves inhibit the development of protective anti-melanoma immune response and formation of tertiary lymphoid structures
K Vats, O Kruglov, B Sahoo, J Zhang, V Sonam, U Chandran, GV Shurin, ...
The Journal of Immunology 210 (1_Supplement), 172.09-172.09, 2023
2023
Benchmarking Machine Learning Robustness in Covid-19 Spike Sequence Classification
S Ali, B Sahoo, PY Chen, M Patterson
2021
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