| Self-destructive cooperation mediated by phenotypic noise M Ackermann, B Stecher, NE Freed, P Songhet, WD Hardt, M Doebeli Nature 454 (7207), 987-990, 2008 | 472 | 2008 |
| Rapid identification and strain-typing of respiratory pathogens for epidemic surveillance DJ Ecker, R Sampath, LB Blyn, MW Eshoo, C Ivy, JA Ecker, B Libby, ... Proceedings of the National Academy of Sciences 102 (22), 8012-8017, 2005 | 271 | 2005 |
| Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding NE Freed, M Vlková, MB Faisal, OK Silander Biology Methods and Protocols 5 (1), bpaa014, 2020 | 248 | 2020 |
| Transmission dynamics and prospective environmental sampling of adenovirus in a military recruit setting KL Russell, MP Broderick, SE Franklin, LB Blyn, NE Freed, E Moradi, ... The Journal of Infectious Diseases 194 (7), 877-885, 2006 | 217 | 2006 |
| Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch Á O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 2021 | 187 | 2021 |
| Testing the advantages and disadvantages of short-and long-read eukaryotic metagenomics using simulated reads WS Pearman, NE Freed, OK Silander BMC bioinformatics 21, 1-15, 2020 | 104* | 2020 |
| A simple screen to identify promoters conferring high levels of phenotypic noise NE Freed, OK Silander, B Stecher, A Böhm, WD Hardt, M Ackermann PLoS genetics 4 (12), e1000307, 2008 | 97 | 2008 |
| Rapid detection and molecular serotyping of adenovirus by use of PCR followed by electrospray ionization mass spectrometry LB Blyn, TA Hall, B Libby, R Ranken, R Sampath, K Rudnick, E Moradi, ... Journal of clinical microbiology 46 (2), 644-651, 2008 | 72 | 2008 |
| Molecular analysis of adenovirus isolates from vaccinated and unvaccinated young adults DA Blasiole, D Metzgar, LT Daum, MAK Ryan, J Wu, C Wills, CT Le, ... Journal of clinical microbiology 42 (4), 1686-1693, 2004 | 65 | 2004 |
| Co-infections of adenovirus species in previously vaccinated patients GJ Vora, B Lin, K Gratwick, C Meador, C Hansen, C Tibbetts, DA Stenger, ... Emerging infectious diseases 12 (6), 921, 2006 | 51 | 2006 |
| Use of genomics to track coronavirus disease outbreaks, New Zealand JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ... Emerging Infectious Diseases 27 (5), 1317, 2021 | 42 | 2021 |
| Effectiveness of the 2003–2004 influenza vaccine among US military basic trainees: a year of suboptimal match between vaccine and circulating strain KL Russell, MAK Ryan, A Hawksworth, NE Freed, M Irvine, LT Daum, ... Vaccine 23 (16), 1981-1985, 2005 | 34 | 2005 |
| Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality NE Freed, D Bumann, OK Silander BMC Microbiology 16 (203), 1-14, 2016 | 26 | 2016 |
| SARS-CoV2 genome sequencing protocol (1200bp amplicon" midnight" primer set, using Nanopore Rapid kit) N Freed, O Silander | 13 | 2021 |
| Creation of a dense transposon insertion library using bacterial conjugation in enterobacterial strains such as Escherichia coli or Shigella flexneri NE Freed JoVE (Journal of Visualized Experiments), e56216, 2017 | 13 | 2017 |
| Diagnostic discrimination of live attenuated influenza vaccine strains and community-acquired pathogenic strains in clinical samples NE Freed, CA Myers, KL Russell, EA Walter, M Irvine, RG Coon, ... Molecular and cellular probes 21 (2), 103-110, 2007 | 11 | 2007 |
| Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod WS Pearman, SJ Wells, OK Silander, NE Freed, J Dale Ecology and Evolution 10 (24), 13624-13639, 2020 | 9* | 2020 |
| New tools for diet analysis: nanopore sequencing of metagenomic DNA from rat stomach contents to quantify diet NE Freed, WS Pearman, ANH Smith, G Breckell, J Dale, OK Silander | 5* | 2018 |
| Complete genome sequences of cluster a mycobacteriophages BobSwaget, Fred313, KADY, Lokk, MyraDee, Stagni, and StepMih KA Butela, SMR Gurney, HL Hendrickson, JM LeBlanc-Straceski, ... Genome Announcements 5 (43), 10.1128/genomea. 01182-17, 2017 | 5 | 2017 |
| Surveillance for febrile respiratory infections during Cobra Gold 2003 J Fuller, K Hanley, R Schultz, M Lewis, NE Freed, M Ellis, V Ngauy, ... Military medicine 171 (5), 357-359, 2006 | 4 | 2006 |
Olin SilanderSenior Research Fellow, Liggins Institute, University of AucklandVerified email at auckland.ac.nz
