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Snakemake—a scalable bioinformatics workflow engine
J Köster, S Rahmann
Bioinformatics 28 (19), 2520-2522, 2012
27152012
Sustainable data analysis with Snakemake
F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ...
F1000Research 10, 2021
11802021
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
11632018
Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3
M Martin, L Maßhöfer, P Temming, S Rahmann, C Metz, N Bornfeld, ...
Nature genetics 45 (8), 933-936, 2013
5972013
Mutational dynamics between primary and relapse neuroblastomas
A Schramm, J Köster, Y Assenov, K Althoff, M Peifer, E Mahlow, ...
Nature genetics 47 (8), 872-877, 2015
3872015
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
3572018
A mechanistic classification of clinical phenotypes in neuroblastoma
S Ackermann, M Cartolano, B Hero, A Welte, Y Kahlert, A Roderwieser, ...
Science 362 (6419), 1165-1170, 2018
3222018
HMM Logos for visualization of protein families
B Schuster-Böckler, J Schultz, S Rahmann
BMC bioinformatics 5, 1-8, 2004
2822004
A comprehensive molecular study on Coffin–Siris and Nicolaides–Baraitser syndromes identifies a broad molecular and clinical spectrum converging on altered chromatin remodeling
D Wieczorek, N Boegershausen, F Beleggia, S Steiner-Haldenstaett, ...
Human molecular genetics 22 (25), 5121-5135, 2013
2522013
Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
JH Schulte, T Marschall, M Martin, P Rosenstiel, P Mestdagh, S Schlierf, ...
Nucleic acids research 38 (17), 5919-5928, 2010
2242010
N6-adenosine methylation in MiRNAs
T Berulava, S Rahmann, K Rademacher, L Klein-Hitpass, B Horsthemke
PloS one 10 (2), e0118438, 2015
1652015
Supratentorial ependymomas of childhood carry C11orf95–RELA fusions leading to pathological activation of the NF-κB signaling pathway
T Pietsch, I Wohlers, T Goschzik, V Dreschmann, D Denkhaus, E Dörner, ...
Acta neuropathologica 127, 609-611, 2014
1332014
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ...
Nature methods 7 (6), 419-420, 2010
1322010
On the power of profiles for transcription factor binding site detection
S Rahmann, T Müller, M Vingron
Statistical applications in genetics and molecular biology 2 (1), 2003
1272003
SimLoRD: simulation of long read data
BK Stöcker, J Köster, S Rahmann
Bioinformatics 32 (17), 2704-2706, 2016
1182016
Human TLR 8 senses UR/URR motifs in bacterial and mitochondrial RNA
A Krüger, M Oldenburg, C Chebrolu, D Beisser, J Kolter, AM Sigmund, ...
EMBO reports 16 (12), 1656-1663, 2015
1082015
Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing
T Wittkop, J Baumbach, FP Lobo, S Rahmann
BMC bioinformatics 8, 1-12, 2007
1072007
Exact and heuristic algorithms for weighted cluster editing
S Rahmann, T Wittkop, J Baumbach, M Martin, A Truss, S Böcker
Computational Systems Bioinformatics: (Volume 6), 391-401, 2007
1002007
Algorithms for subsequence combinatorics
C Elzinga, S Rahmann, H Wang
Theoretical Computer Science 409 (3), 394-404, 2008
962008
Epigenetic dynamics of monocyte-to-macrophage differentiation
S Wallner, C Schröder, E Leitão, T Berulava, C Haak, D Beißer, ...
Epigenetics & chromatin 9, 1-17, 2016
942016
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